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CAZyme Information: PYU1_T005883-p1

You are here: Home > Sequence: PYU1_T005883-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Globisporangium ultimum
Lineage Oomycota; NA; ; Pythiaceae; Globisporangium; Globisporangium ultimum
CAZyme ID PYU1_T005883-p1
CAZy Family GH5
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
284 30831.39 4.0777
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_GultimumDAOMBR144 15430 431595 140 15290
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PYU1_T005883-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 14 243 3.6e-67 0.8979591836734694

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
235640 PRK05901 0.003 190 281 107 196
RNA polymerase sigma factor; Provisional
235640 PRK05901 0.003 189 282 124 212
RNA polymerase sigma factor; Provisional
398544 DNA_pol_phi 0.004 205 269 627 685
DNA polymerase phi. This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.
227693 COG5406 0.005 214 269 927 979
Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and repair, Chromatin structure and dynamics].
380146 MSCRAMM_SdrC 0.006 193 282 709 800
MSCRAMM family adhesin SdrC. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.35e-74 20 198 18 197
1.39e-74 20 198 18 197
1.39e-74 20 198 18 197
2.79e-74 20 193 18 192
2.79e-74 20 198 18 197

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.27e-17 24 191 1 170
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PYU1_T005883-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000289 0.999713 CS pos: 23-24. Pr: 0.9758

TMHMM  Annotations      help

There is no transmembrane helices in PYU1_T005883-p1.