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CAZyme Information: PV07_06463-t44_1-p1

You are here: Home > Sequence: PV07_06463-t44_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Cladophialophora immunda
Lineage Ascomycota; Eurotiomycetes; ; Herpotrichiellaceae; Cladophialophora; Cladophialophora immunda
CAZyme ID PV07_06463-t44_1-p1
CAZy Family GH3
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
475 KN847043.1|CGC2 51005.90 5.5104
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_CimmundaCBS83496 12879 N/A 49 12830
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PV07_06463-t44_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 94 463 2.6e-55 0.9661538461538461

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
177865 PLN02218 1.11e-25 80 461 77 418
polygalacturonase ADPG
395231 Glyco_hydro_28 2.87e-18 161 458 54 321
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
178580 PLN03003 3.48e-18 165 469 117 388
Probable polygalacturonase At3g15720
215120 PLN02188 6.37e-16 82 462 48 391
polygalacturonase/glycoside hydrolase family protein
215426 PLN02793 6.42e-16 161 461 143 409
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.43e-188 36 468 32 457
7.51e-185 30 468 26 457
1.19e-183 36 468 32 456
7.90e-176 116 464 1 348
2.48e-109 70 470 28 437

PDB Hits      help

PV07_06463-t44_1-p1 has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.41e-110 70 470 28 437
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2
6.23e-110 53 470 12 437
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1
1.53e-107 71 470 28 436
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rgxA PE=3 SV=1
1.53e-107 71 470 28 436
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2
7.34e-61 74 445 30 395
Putative galacturan 1,4-alpha-galacturonidase C OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxC PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000246 0.999758 CS pos: 20-21. Pr: 0.9735

TMHMM  Annotations      download full data without filtering help

Start End
7 29