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CAZyme Information: PUG3_T013957-RA-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Globisporangium ultimum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Pythiaceae; Globisporangium; Globisporangium ultimum | |||||||||||
| CAZyme ID | PUG3_T013957-RA-p1 | |||||||||||
| CAZy Family | GT71 | |||||||||||
| CAZyme Description | Pectin lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.10:1 |
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CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 131 | 198 | 2.6e-27 | 0.36363636363636365 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 1.42e-15 | 132 | 199 | 2 | 71 | Amb_all domain. |
| 226384 | PelB | 4.03e-05 | 142 | 198 | 97 | 153 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 1.68e-04 | 127 | 194 | 15 | 84 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 5.00e-80 | 25 | 208 | 19 | 199 | |
| 6.13e-80 | 28 | 208 | 56 | 233 | |
| 6.13e-80 | 28 | 208 | 56 | 233 | |
| 2.45e-79 | 28 | 208 | 56 | 233 | |
| 8.01e-79 | 25 | 200 | 19 | 193 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.51e-35 | 30 | 194 | 4 | 158 | Pectin Lyase B [Aspergillus niger] |
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| 1.87e-30 | 31 | 192 | 5 | 156 | Pectin Lyase A [Aspergillus niger] |
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| 2.62e-30 | 31 | 192 | 5 | 156 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4.77e-38 | 13 | 199 | 5 | 177 | Probable pectin lyase C OS=Aspergillus niger OX=5061 GN=pelC PE=3 SV=1 |
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| 8.51e-38 | 13 | 199 | 5 | 177 | Probable pectin lyase C OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelC PE=3 SV=1 |
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| 1.41e-36 | 23 | 192 | 16 | 175 | Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1 |
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| 2.72e-36 | 22 | 194 | 13 | 176 | Probable pectin lyase A OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=pelA PE=3 SV=1 |
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| 2.82e-36 | 31 | 199 | 26 | 184 | Pectin lyase OS=Colletotrichum gloeosporioides OX=474922 GN=PNLA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000277 | 0.999700 | CS pos: 27-28. Pr: 0.9706 |