logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PUG3_T012610-RA-p1

You are here: Home > Sequence: PUG3_T012610-RA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Globisporangium ultimum
Lineage Oomycota; NA; ; Pythiaceae; Globisporangium; Globisporangium ultimum
CAZyme ID PUG3_T012610-RA-p1
CAZy Family GT4
CAZyme Description Polysaccharide lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
146 14795.90 7.0384
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_GultimumBR650 14086 1223559 0 14086
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2:4

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL3 25 104 5.2e-32 0.4020618556701031

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
397360 Pectate_lyase 3.01e-35 34 109 36 115
Pectate lyase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
4.55e-42 21 144 28 260
1.82e-41 21 145 28 261
5.59e-38 12 142 9 250
2.26e-35 1 106 1 134
4.05e-29 24 104 8 116

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.29e-12 28 103 23 97
Crystal Structure Of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. [Bacillus sp. KSM-P15]
9.09e-10 48 105 55 119
C. bescii Family 3 pectate lyase double mutant K108A/D107N in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725],4YZX_B C. bescii Family 3 pectate lyase double mutant K108A/D107N in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725]
1.26e-09 48 105 55 119
C. bescii Family 3 pectate lyase double mutant K108A/Q111N in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725],4YZQ_B C. bescii Family 3 pectate lyase double mutant K108A/Q111N in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725]
1.26e-09 48 105 55 119
C. bescii Family 3 pectate lyase double mutant K108A/R133A in complex with ALPHA-D-GALACTOPYRANURONIC ACID [Caldicellulosiruptor bescii DSM 6725],4Z06_B C. bescii Family 3 pectate lyase double mutant K108A/R133A in complex with ALPHA-D-GALACTOPYRANURONIC ACID [Caldicellulosiruptor bescii DSM 6725]
1.26e-09 48 105 55 119
C. bescii Family 3 pectate lyase double mutant K108A/Q111A in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725],4YZA_B C. bescii Family 3 pectate lyase double mutant K108A/Q111A in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.01e-24 36 101 68 132
Probable pectate lyase E OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyE PE=3 SV=1
1.17e-23 36 101 68 132
Pectate lyase E OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyE PE=1 SV=1
1.75e-22 36 96 68 127
Probable pectate lyase E OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyE PE=3 SV=1
1.75e-22 36 101 68 132
Probable pectate lyase E OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=plyE PE=3 SV=1
1.75e-22 36 96 68 127
Probable pectate lyase E OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyE PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000190 0.999792 CS pos: 21-22. Pr: 0.9796

TMHMM  Annotations      help

There is no transmembrane helices in PUG3_T012610-RA-p1.