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CAZyme Information: PUG3_T011450-RA-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Globisporangium ultimum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Pythiaceae; Globisporangium; Globisporangium ultimum | |||||||||||
| CAZyme ID | PUG3_T011450-RA-p1 | |||||||||||
| CAZy Family | GT1 | |||||||||||
| CAZyme Description | Pectin lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.10:1 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 123 | 227 | 7.3e-38 | 0.5187165775401069 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 2.08e-16 | 122 | 209 | 2 | 80 | Amb_all domain. |
| 226384 | PelB | 1.37e-08 | 73 | 209 | 18 | 165 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 2.22e-05 | 132 | 208 | 27 | 98 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 1.06e-114 | 1 | 227 | 1 | 227 | |
| 1.73e-113 | 1 | 227 | 1 | 227 | |
| 1.73e-113 | 1 | 227 | 1 | 227 | |
| 1.45e-109 | 17 | 227 | 51 | 261 | |
| 1.45e-109 | 17 | 227 | 51 | 261 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 8.63e-41 | 24 | 227 | 4 | 191 | Pectin Lyase B [Aspergillus niger] |
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| 4.47e-35 | 25 | 227 | 5 | 191 | Pectin Lyase A [Aspergillus niger] |
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| 9.13e-34 | 25 | 227 | 5 | 191 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2.91e-47 | 13 | 227 | 15 | 212 | Pectin lyase OS=Colletotrichum gloeosporioides OX=474922 GN=PNLA PE=3 SV=1 |
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| 1.09e-46 | 24 | 227 | 24 | 211 | Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1 |
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| 5.43e-46 | 17 | 227 | 19 | 213 | Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1 |
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| 5.43e-46 | 17 | 227 | 19 | 213 | Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1 |
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| 7.12e-44 | 13 | 227 | 12 | 210 | Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000189 | 0.999794 | CS pos: 21-22. Pr: 0.9775 |