logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PUG3_T009473-RA-p1

You are here: Home > Sequence: PUG3_T009473-RA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Globisporangium ultimum
Lineage Oomycota; NA; ; Pythiaceae; Globisporangium; Globisporangium ultimum
CAZyme ID PUG3_T009473-RA-p1
CAZy Family GH5
CAZyme Description Carbohydrate-binding protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
727 78683.82 7.2335
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_GultimumBR650 14086 1223559 0 14086
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 1.1.99.18:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 23 477 1.2e-90 0.8284671532846716

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225186 BetA 9.16e-32 30 387 8 339
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000 PRK02106 6.18e-26 25 353 1 311
choline dehydrogenase; Validated
366272 GMC_oxred_N 9.35e-15 117 331 24 215
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
238533 APPLE_Factor_XI_like 6.71e-10 585 652 8 72
Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
238533 APPLE_Factor_XI_like 7.93e-08 665 725 11 70
Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.76e-223 7 650 8 635
5.84e-195 30 727 24 714
4.73e-181 30 715 24 706
2.95e-149 30 508 22 526
6.97e-149 6 537 3 560

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.13e-49 30 526 3 534
Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
1.23e-49 30 526 8 539
Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
5.44e-36 30 536 8 552
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
2.07e-35 30 536 230 774
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
2.69e-34 30 536 230 773
Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.16e-47 30 526 235 766
Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
1.71e-17 30 382 3 342
Oxygen-dependent choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) OX=585034 GN=betA PE=3 SV=1
1.71e-17 30 382 3 342
Oxygen-dependent choline dehydrogenase OS=Escherichia coli (strain SE11) OX=409438 GN=betA PE=3 SV=1
1.71e-17 30 382 3 342
Oxygen-dependent choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) OX=585055 GN=betA PE=3 SV=1
1.71e-17 30 382 3 342
Oxygen-dependent choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.001648 0.998313 CS pos: 26-27. Pr: 0.9600

TMHMM  Annotations      help

There is no transmembrane helices in PUG3_T009473-RA-p1.