CAZyme Information: PSURA_96749T0-p1

Basic Information

• Species: Phytophthora ramorum
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora ramorum
• CAZyme ID: PSURA_96749T0-p1
• CAZy Family: PL3
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1028	PramPr-102_SC0102|CGC1	120930.85	10.4653

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PramorumPr-102	15743	N/A	251	15492

• Gene Location: location=PramPr-102_SC0102:136958-141047(+)

Full Sequence      

MNEKQLQARVFHCVHVEQRLLSAWMEYLRARKQKKVALAFNTGKVNRAMFGFWKHRAHVL
QQMRKMFLYQESFRAQTHFGAWKRYLLTRKQMNERLRKAMRFRSNLRKAHVWQKWNAWVS
IQRQERETIQLAVAFRQRFFSRKSFAVWRKRAAYWRRKRALANQALRHYQERLVCRSLQS
FVDWRQSIKRLARLQRELAALLIEKRKRLAISTLRALCAETNRKQALAKQACRHWQRYHQ
LKYWGCAMQWFRVAQHRKLQGIQADAFARTNLLRRCLAAVRVHIVHVKQVKARVDAFRCR
FFRSVADDCFFQWRAFATFKQKLRVLRRKTLQSERRQRLQHWHLITVEQARRRTRMQQIA
AKRRQRELLCWFNHWESVCTDLWLEKELVTHHQRHAHKRRLLRCGINALSAQLPARHERQ
KCSRFFLQHHRHFIIQILQQWRQATSTYKMFSDYERLPVDARASPRPRRRTHRMDIALLS
VLLFVACFIGVRPPALRSQKPLLTPNKSHFLTVTYSPRGFEIDGKRTLLLGGSIHYPRSS
AGQWEQLLREAKRDGLNHVEMYVFWNLHEQERGVWNFADNANITRFYELAADVGLFLHVR
FGPYVCAEWSNGGLPVWLNWVPGMKMRSSNGPWQREMERFITYMVELSRPFLAKNGGPII
MAQIENEFAWHDPQYIEWCGELVKRLDTSIPWIMCYANAAENTILSCNDNDCVDFAVKHV
KERPSDPLVWTEDEGWFQTWQKNKNNPLPNDQRTPEDMAYAVARWFAVGGAAHNYYMYHG
GNNYGRAASAGVTTMYADGVNLHADGLSNEPKRSHLRKLHEALIECNDVLMSNDRQLLHP
HELPLVDEQAIEASAEQRAFIYGPEDGPNRVAFLENLAAEGQQWTMYPGLVGEQLEIYYP
QWADSVPWALVPRASEDTTVDGQQSSILLDCLGLTRGRAYINGHDLGRYWLINDEGDFVQ
RYYHIPRDWLLKDQENLLLVFDELGGSVASVRVVTSTLVAEAAAIEIGTSATDFATSNES
SVVAVSRE

Enzyme Prediction     

No EC number prediction in PSURA_96749T0-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH35	520	821	1.4e-86	0.993485342019544

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
396048	Glyco_hydro_35	2.15e-94	520	820	2	315	Glycosyl hydrolases family 35.
166698	PLN03059	3.38e-84	512	834	29	353	beta-galactosidase; Provisional
224786	GanA	5.50e-19	513	785	1	292	Beta-galactosidase GanA [Carbohydrate transport and metabolism].
400658	Sfi1	7.93e-05	88	343	312	567	Sfi1 spindle body protein. This is a family of fungal spindle pole body proteins that play a role in spindle body duplication. They contain binding sites for calmodulin-like proteins called centrins which are present in microtubule-organising centers.
396834	Glyco_hydro_42	4.42e-04	535	672	6	142	Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ26848.1|GH35	5.19e-275	457	999	12	796
CCA17560.1|GH35	1.58e-157	472	998	39	794
ACD54699.1|GH35	2.64e-105	513	879	34	390
UJR36785.1|GH35	3.67e-105	513	831	34	350
ACD54708.1|GH35	7.11e-105	513	879	34	390

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3W5F_A	4.09e-72	512	833	7	330	Chain A, Beta-galactosidase [Solanum lycopersicum],3W5F_B Chain B, Beta-galactosidase [Solanum lycopersicum],3W5G_A Chain A, Beta-galactosidase [Solanum lycopersicum],3W5G_B Chain B, Beta-galactosidase [Solanum lycopersicum],6IK5_A Chain A, Beta-galactosidase [Solanum lycopersicum],6IK5_B Chain B, Beta-galactosidase [Solanum lycopersicum]
6IK6_A	2.68e-71	512	833	7	330	Chain A, Beta-galactosidase [Solanum lycopersicum],6IK6_B Chain B, Beta-galactosidase [Solanum lycopersicum],6IK7_A Chain A, Beta-galactosidase [Solanum lycopersicum],6IK7_B Chain B, Beta-galactosidase [Solanum lycopersicum],6IK8_A Chain A, Beta-galactosidase [Solanum lycopersicum],6IK8_B Chain B, Beta-galactosidase [Solanum lycopersicum]
4MAD_A	2.36e-41	520	810	24	321	Chain A, Beta-galactosidase [Niallia circulans],4MAD_B Chain B, Beta-galactosidase [Niallia circulans]
4E8C_A	6.54e-34	520	785	10	284	Crystal structure of streptococcal beta-galactosidase in complex with galactose [Streptococcus pneumoniae TIGR4],4E8C_B Crystal structure of streptococcal beta-galactosidase in complex with galactose [Streptococcus pneumoniae TIGR4],4E8D_A Crystal structure of streptococcal beta-galactosidase [Streptococcus pneumoniae TIGR4],4E8D_B Crystal structure of streptococcal beta-galactosidase [Streptococcus pneumoniae TIGR4]
7KDV_A	2.12e-33	515	796	20	308	Chain A, Beta-galactosidase [Mus musculus],7KDV_C Chain C, Beta-galactosidase [Mus musculus],7KDV_E Chain E, Beta-galactosidase [Mus musculus],7KDV_G Chain G, Beta-galactosidase [Mus musculus],7KDV_I Chain I, Beta-galactosidase [Mus musculus],7KDV_K Chain K, Beta-galactosidase [Mus musculus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q9MAJ7|BGAL5_ARATH	6.65e-77	512	994	30	727	Beta-galactosidase 5 OS=Arabidopsis thaliana OX=3702 GN=BGAL5 PE=2 SV=1
sp|Q9SCV4|BGAL8_ARATH	8.76e-77	513	978	32	499	Beta-galactosidase 8 OS=Arabidopsis thaliana OX=3702 GN=BGAL8 PE=2 SV=2
sp|Q9SCV5|BGAL7_ARATH	1.79e-75	513	906	28	403	Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2
sp|Q9SCU9|BGA13_ARATH	1.09e-73	478	831	12	365	Beta-galactosidase 13 OS=Arabidopsis thaliana OX=3702 GN=BGAL13 PE=2 SV=1
sp|Q9SCV9|BGAL3_ARATH	1.68e-73	513	906	33	409	Beta-galactosidase 3 OS=Arabidopsis thaliana OX=3702 GN=BGAL3 PE=2 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000058	0.000000

TMHMM  Annotations     

There is no transmembrane helices in PSURA_96749T0-p1.