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CAZyme Information: PSURA_86921T0-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytophthora ramorum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora ramorum | |||||||||||
| CAZyme ID | PSURA_86921T0-p1 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.10:1 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 165 | 354 | 6e-82 | 0.983957219251337 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 5.49e-38 | 164 | 357 | 1 | 190 | Amb_all domain. |
| 226384 | PelB | 2.61e-16 | 158 | 353 | 82 | 273 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 6.72e-13 | 150 | 353 | 4 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
| 404168 | Beta_helix | 8.06e-04 | 239 | 354 | 13 | 111 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
| 404168 | Beta_helix | 0.005 | 254 | 355 | 3 | 89 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 3.44e-207 | 36 | 438 | 1 | 404 | |
| 3.33e-165 | 56 | 441 | 187 | 564 | |
| 1.54e-155 | 40 | 383 | 11 | 346 | |
| 1.66e-145 | 37 | 335 | 1 | 296 | |
| 1.09e-132 | 35 | 438 | 2 | 399 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.47e-84 | 63 | 396 | 5 | 322 | Pectin Lyase B [Aspergillus niger] |
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| 2.88e-77 | 62 | 394 | 4 | 319 | Pectin Lyase A [Aspergillus niger] |
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| 4.05e-77 | 62 | 394 | 4 | 319 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
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| 1.71e-07 | 158 | 362 | 59 | 285 | Chain A, PECTATE LYASE E [Dickeya chrysanthemi] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7.07e-95 | 40 | 396 | 3 | 343 | Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2 |
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| 7.07e-95 | 40 | 396 | 3 | 343 | Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1 |
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| 2.82e-92 | 67 | 398 | 29 | 343 | Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1 |
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| 7.32e-90 | 49 | 394 | 7 | 338 | Probable pectin lyase A OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=pelA PE=3 SV=1 |
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| 1.67e-88 | 62 | 394 | 23 | 339 | Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.609331 | 0.390660 |