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CAZyme Information: PSURA_85623T0-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytophthora ramorum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora ramorum | |||||||||||
| CAZyme ID | PSURA_85623T0-p1 | |||||||||||
| CAZy Family | GT71 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.10:1 | 4.2.2.10:1 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 622 | 812 | 1.5e-79 | 0.983957219251337 |
| PL1 | 127 | 317 | 2.5e-77 | 0.983957219251337 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 7.69e-38 | 127 | 320 | 2 | 190 | Amb_all domain. |
| 214765 | Amb_all | 2.21e-34 | 621 | 815 | 1 | 190 | Amb_all domain. |
| 226384 | PelB | 3.13e-17 | 617 | 812 | 73 | 274 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 226384 | PelB | 4.12e-14 | 124 | 317 | 84 | 274 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 5.39e-14 | 625 | 811 | 23 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 2.30e-223 | 373 | 902 | 3 | 567 | |
| 8.42e-175 | 11 | 564 | 5 | 534 | |
| 1.42e-171 | 527 | 841 | 32 | 346 | |
| 3.74e-121 | 25 | 298 | 9 | 296 | |
| 8.05e-119 | 528 | 896 | 24 | 399 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3.01e-82 | 527 | 857 | 3 | 325 | Pectin Lyase B [Aspergillus niger] |
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| 3.03e-79 | 32 | 362 | 3 | 324 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
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| 3.02e-78 | 32 | 362 | 3 | 324 | Pectin Lyase A [Aspergillus niger] |
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| 4.25e-09 | 130 | 331 | 69 | 293 | Chain A, PECTATE LYASE E [Dickeya chrysanthemi] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 8.35e-96 | 527 | 901 | 23 | 390 | Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1 |
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| 5.69e-90 | 527 | 898 | 23 | 384 | Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1 |
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| 5.69e-90 | 527 | 898 | 23 | 384 | Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2 |
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| 1.72e-86 | 527 | 896 | 18 | 386 | Probable pectin lyase E OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelE PE=3 SV=1 |
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| 9.11e-86 | 28 | 405 | 20 | 387 | Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000384 | 0.999584 | CS pos: 28-29. Pr: 0.9720 |