CAZyme Information: PSURA_84178T0-p1

Basic Information

• Species: Phytophthora ramorum
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora ramorum
• CAZyme ID: PSURA_84178T0-p1
• CAZy Family: GT41
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
529		58750.11	4.5870

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PramorumPr-102	15743	N/A	251	15492

• Gene Location: location=PramPr-102_SC0105:107801-109390(+)

Full Sequence      

MKAGMIIVSLIGLTSTSTAVATPSWHDLAITAPQYGRYLYRTASEEPFFWQADTAWELVH
KLNKTSIDFYLRTRAEQGYNAVQTVVISENNGTTRANFYGDLPFANSDTTQPNDAYFQLV
DWTVERAASYGILMVLVPAWGNWISGGWHGTEESLFNESTAYEWGKYVGERYPGLPKILG
GDTNCLWARNLMAASISYSGNPDVDPATLVGTIEDTTHLWVSMRSGVKHGEKAQGYEPVI
LFHPTAGRIARPASTPMAYGHLMLPNEEDRVSIDAVQSGHATPESLGPFTPFEARDSTKN
YELIAAMRDGFTGPVLDLENHYEGAHYNFDPEYPIWNASEVRTGLYNGVYSGAAGFTYGA
NSVWQMYEPRSDLLRDSDYYSPSVNQNASGSWRIDIFFKGATQIQYVTKPLQNLTIDELE
QLEPARHLLSSPSGYTDIAVNAFESTRFISVLASETRNRFYVYTGHGDSFSLKVGNGSER
SGTARWFSPRDGEYYSTSAVEVPANVTRVDFTPPSGGSVDDDWLLVLEF

Enzyme Prediction     

No EC number prediction in PSURA_84178T0-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH140	36	524	9e-75	0.9757281553398058

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
404153	DUF4038	1.29e-115	36	414	2	320	Protein of unknown function (DUF4038). A family of putative cellulases.
403955	Collagen_bind_2	3.07e-10	456	528	21	92	Putative collagen-binding domain of a collagenase. This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. It is the C-terminal part of the Structure 3kzs (information derived from TOPSAN).

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
KAF2142288.1|GH140	5.76e-151	15	528	19	534
KAF3763706.1|GH140	5.16e-146	6	527	4	535
KNX49908.1|GH140	2.73e-79	27	524	13	514
KAB8276359.1|GH140	1.36e-76	21	528	17	508
KAE8156220.1|GH140	3.75e-76	21	528	17	508

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5MSY_A	1.09e-19	25	493	13	414	Glycoside hydrolase BT_1012 [Bacteroides thetaiotaomicron VPI-5482],5MSY_B Glycoside hydrolase BT_1012 [Bacteroides thetaiotaomicron VPI-5482],5MSY_C Glycoside hydrolase BT_1012 [Bacteroides thetaiotaomicron VPI-5482]
3KZS_A	1.48e-17	25	493	13	414	Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution [Bacteroides thetaiotaomicron VPI-5482],3KZS_B Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution [Bacteroides thetaiotaomicron VPI-5482],3KZS_C Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution [Bacteroides thetaiotaomicron VPI-5482],3KZS_D Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits     

PSURA_84178T0-p1 has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000711	0.999240	CS pos: 21-22. Pr: 0.9490

TMHMM  Annotations     

There is no transmembrane helices in PSURA_84178T0-p1.