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CAZyme Information: PSURA_83573T0-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytophthora ramorum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora ramorum | |||||||||||
| CAZyme ID | PSURA_83573T0-p1 | |||||||||||
| CAZy Family | GT20 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.15:10 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 157 | 274 | 3.9e-20 | 0.35384615384615387 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 395231 | Glyco_hydro_28 | 5.01e-33 | 48 | 284 | 1 | 321 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 177865 | PLN02218 | 0.002 | 165 | 216 | 304 | 355 | polygalacturonase ADPG |
| 215120 | PLN02188 | 0.003 | 165 | 245 | 267 | 348 | polygalacturonase/glycoside hydrolase family protein |
| 215540 | PLN03010 | 0.007 | 176 | 273 | 280 | 379 | polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 2.43e-154 | 1 | 284 | 1 | 360 | |
| 2.81e-149 | 1 | 284 | 1 | 363 | |
| 9.53e-145 | 1 | 284 | 1 | 361 | |
| 7.89e-142 | 1 | 284 | 1 | 363 | |
| 1.46e-138 | 8 | 284 | 6 | 358 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6.33e-44 | 28 | 284 | 6 | 344 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 6.33e-44 | 28 | 284 | 6 | 344 | Chain A, endo-polygalacturonase [Evansstolkia leycettana] |
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| 6.08e-42 | 32 | 284 | 2 | 336 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 7.36e-39 | 31 | 284 | 1 | 336 | Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_B Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_C Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_D Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_E Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_F Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger] |
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| 2.77e-32 | 33 | 284 | 4 | 339 | Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4.24e-43 | 10 | 284 | 14 | 371 | Polygalacturonase OS=Penicillium janthinellum OX=5079 PE=3 SV=1 |
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| 1.53e-42 | 12 | 284 | 14 | 368 | Probable endopolygalacturonase I OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pgaI PE=3 SV=1 |
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| 1.50e-41 | 1 | 284 | 1 | 364 | Endopolygalacturonase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pgaB PE=1 SV=2 |
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| 8.63e-41 | 15 | 284 | 14 | 367 | Probable endopolygalacturonase I OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgaI PE=3 SV=1 |
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| 8.63e-41 | 15 | 284 | 14 | 367 | Endopolygalacturonase B OS=Aspergillus flavus (strain ATCC MYA-384 / AF70) OX=1392242 GN=pgaB PE=2 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.004338 | 0.995667 | CS pos: 18-19. Pr: 0.7968 |