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CAZyme Information: PSURA_82591T0-p1

You are here: Home > Sequence: PSURA_82591T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora ramorum
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora ramorum
CAZyme ID PSURA_82591T0-p1
CAZy Family GH81
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1787 202070.78 9.8451
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PramorumPr-102 15743 N/A 251 15492
Gene Location Start: 132125; End:138847  Strand: +

Full Sequence      Download help

MLQTLSSVAA  LVVAASMVSG  LPVPDGTWPV  SKGSVKFEAV  HLIKAGEVFD  GKMQTFDRTN60
ITCLGQEESG  QSTAVFQLEA  NATLKNAIIG  KNQMEGVHCD  DNDCTIDNVW  WDDVCEDALS120
IKGGDASSVS  RVLGGGARYA  DDKVIQHNGL  GTVIIDGFYA  QDFGKLYRSC  GSCSNNPAQR180
FLNMRNVFAD  LEIIQAQRVD  PNVSIVMMNE  NYGDEAVLHN  IYVKPGAENY  TECGWSRGVQ240
KGDKPLILGN  GPKDPVCQYT  MDEIHLTEGD  RSMQQDQVVA  TVHPAKEEKQ  TALATMDKLV300
QLQAALRAIE  TGKRLESVDN  VLVRQVLLQP  RAQPQQATRE  HDARDIYREL  QALRKAKAKA360
SAKQNVRDNE  SSGETSDVGA  TPPSPKKTLA  PAHHHCSVPV  VDGRLESAPS  SPERHSNNDN420
ELVLSTADTI  ELMQKAFLTR  EKELKRSEKA  VARADAELRE  ELSRAEKILP  SKFLFERNLA480
GDRALEAARN  VLLRFQHRFY  QLYFRQWWRA  TLELRLQAQR  RAVAEIVRVY  RGHRGRQEAR540
RLRRELSVLQ  AQERQLLAFR  MKFRSSQATK  LQMAWRRYLR  HRAIKYRQAR  QAAARLLQQA600
FRTRQWRGQS  LVNALANARK  LFAVVAVQKL  YRGHRTRCKL  AEAKRRQRQE  ARVQLALLRN660
MSKQARAAWM  IERCGAGYLI  AHRAIFPYAM  RLRWHRAVYQ  LRRQAAAECI  ARAVCKWFGV720
EVRREAARAK  QVGEWLALVQ  REHQRSRSAA  VLIQKHLRRW  VQQRKFLMAQ  ARRKKLARKT780
RLAEKARRLE  QTPQRKSPGW  LGSDRKPPVA  TSPKRKPSRF  MSNNSLSPQP  ARLMSFLKPI840
PLKDGNTKAA  RKTNVEAAAL  VQRNFRRYCA  RKKARVRAWK  HKARTVEARV  LQRRKAATEI900
QRRVRGIAGR  TLARRRRAER  LLKSPAKGSV  AVETFSSVDV  DVAVARATAG  AKGALDFAAF960
VRVIGLLGEI  SLAQQAQSAS  PYWGRYDGTE  ARVLALLWRS  LLPHSSMQPL  VLEFEAYVSS1020
ELSRHAACLQ  RLFARQHNKL  HGAAMLVEMR  RILHNEALSR  AAVVLQTQAR  KLLARRELRR1080
RMKETYEKFL  DPTWGLPYWM  NPRSGYSTWQ  KPRLLGAEDV  CCEPVPFPPP  ERTLKASCNG1140
KKNCDRCAEW  VCYDCDEFFC  LECFGEYHKS  TPVFTGEEDS  KEGNDPSLEK  DENVDPNDNR1200
ATAKREHELE  RLQLSLELVT  LSSGNAKRVG  THLAVFVDVV  PTNLIRGKAA  VSSAPCHFKH1260
LADVNEPNAS  RKSKKLVIEL  TWTKYVLGLY  ELARSEAHEN  FKRFGALKPR  FFVLDASLLL1320
VEERRLSIRA  RFFGLLIDEY  VTVGVPLPGL  GLLHPGSNEI  WTSEDLRGWI  RNRQTIRLKK1380
LSPQEAQPAE  RALCAWRQLE  RWGSAEIEAP  EPESQGKDAG  AQPPEATETS  WLVDTHPKQA1440
ITERMVPLAQ  SYDPPLPKTK  RRKAAGEEEE  VVEDVPVAMF  LVEFSLDPKR  TVWINHSLAE1500
RFWEWKRLKL  LARSERTAQR  QRAKDYQKQQ  KDKWKQHQER  NRQENGAIET  EDAPPGVESS1560
AAVDAVVEQP  WAASNSAWTA  DGAATDAYYN  YNYYLSTDAS  TAADGRTGYD  GYSTSYPASY1620
DYGYASTAPE  TAPPVVAEEA  TGLVDSENYY  ANGDYGSGTS  NWYGTEYSAY  EMSGYSPAAT1680
SSDNSGWASY  SAESQLSIDP  NAWYANTGDA  SYNWQQSQPA  QDQGSGTSSH  DSYSIDLPSA1740
TNGYYDPYTD  DQQYSTPQSE  WEEVFDPATQ  QTYYVNRVTN  ETAWQLP1787

Enzyme Prediction      help

EC 4.2.2.2:4

CAZyme Signature Domains help

Created with Snap89178268357446536625714804893982107211611250134014291518160816971185PL3
Family Start End Evalue family coverage
PL3 31 226 1.2e-75 0.9484536082474226

CDD Domains      download full data without filtering help

Created with Snap891782683574465366257148048939821072116112501340142915181608169726243Pectate_lyase11441174Bbox1482779Sfi1502668YccC11431170Bbox1_DUF2009
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
397360 Pectate_lyase 8.11e-85 26 243 2 200
Pectate lyase.
380815 Bbox1 1.19e-05 1144 1174 2 36
B-box-type 1 zinc finger (Bbox1). The B-box-type zinc finger is a short zinc binding domain of around 40 amino acid residues in length. It has been found in transcription factors, ribonucleoproteins and proto-oncoproteins, such as in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). The B-box-type zinc finger often presents in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain, in functionally unrelated proteins, most likely mediating protein-protein interactions. Based on different consensus sequences and the spacing of the 7-8 zinc-binding residues, the B-box-type zinc fingers can be divided into two groups, type 1 (Bbox1: C6H2) and type 2 (Bbox2: CHC3H2). This family corresponds to the type 1 B-box (Bbox1).
400658 Sfi1 5.47e-04 482 779 240 561
Sfi1 spindle body protein. This is a family of fungal spindle pole body proteins that play a role in spindle body duplication. They contain binding sites for calmodulin-like proteins called centrins which are present in microtubule-organising centers.
224208 YccC 0.001 502 668 497 661
Uncharacterized membrane protein YccC [Function unknown].
380909 Bbox1_DUF2009 0.002 1143 1170 4 32
B-box-type 1 zinc finger found in DUF2009 domain-containing proteins and similar proteins. This group is composed of uncharacterized proteins containing a zinc finger B-box domain and a DUF2009 domain, and similar zinc finger B-box domain-containing proteins. The B-box motif shows high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs). The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif.

CAZyme Hits      help

Created with Snap89178268357446536625714804893982107211611250134014291518160816973283ADN18839.1|PL3_23283AHX74070.1|PL3_217209CCD28273.1|PL3_26266ADN18841.1|PL3_25264ADN18837.1|PL3_2
Hit ID E-Value Query Start Query End Hit Start Hit End
ADN18839.1|PL3_2 2.38e-118 3 283 3 292
AHX74070.1|PL3_2 4.49e-118 3 283 3 292
CCD28273.1|PL3_2 3.99e-102 17 209 2 194
ADN18841.1|PL3_2 2.70e-91 6 266 7 252
ADN18837.1|PL3_2 2.55e-84 5 264 12 258

PDB Hits      download full data without filtering help

Created with Snap8917826835744653662571480489398210721161125013401429151816081697431711EE6_A552423B90_A552423B4N_A122424U49_A421724EW9_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
1EE6_A 1.53e-22 43 171 11 135
Crystal Structure Of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. [Bacillus sp. KSM-P15]
3B90_A 3.16e-22 55 242 8 200
Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B90_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
3B4N_A 3.29e-21 55 242 126 318
Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B4N_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_A Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
4U49_A 9.61e-19 12 242 99 321
Chain A, Pectate lyase [Pectobacterium carotovorum],4U49_B Chain B, Pectate lyase [Pectobacterium carotovorum],4U4B_A Chain A, Pectate lyase [Pectobacterium carotovorum]
4EW9_A 1.46e-16 42 172 15 139
The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725],4EW9_B The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725]

Swiss-Prot Hits      download full data without filtering help

Created with Snap891782683574465366257148048939821072116112501340142915181608169714260sp|A1DCY5|PLYD_NEOFI29260sp|Q5BA88|PLYD_EMENI10260sp|B0YB89|PLYD_ASPFC10260sp|Q4WGV9|PLYD_ASPFU29260sp|Q5ATC7|PLYH_EMENI
Hit ID E-Value Query Start Query End Hit Start Hit End Description
sp|A1DCY5|PLYD_NEOFI 2.78e-53 14 260 12 235
Probable pectate lyase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyD PE=3 SV=1
sp|Q5BA88|PLYD_EMENI 7.65e-53 29 260 43 258
Probable pectate lyase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyD PE=3 SV=1
sp|B0YB89|PLYD_ASPFC 2.16e-51 10 260 9 236
Probable pectate lyase D OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyD PE=3 SV=1
sp|Q4WGV9|PLYD_ASPFU 2.16e-51 10 260 9 236
Probable pectate lyase D OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyD PE=3 SV=1
sp|Q5ATC7|PLYH_EMENI 2.41e-48 29 260 41 254
Pectate lyase H OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyH PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000190 0.999770 CS pos: 20-21. Pr: 0.9838

TMHMM  Annotations      help

There is no transmembrane helices in PSURA_82591T0-p1.