CAZyme Information: PSURA_81256T0-p1

Basic Information

• Species: Phytophthora ramorum
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora ramorum
• CAZyme ID: PSURA_81256T0-p1
• CAZy Family: GH5
• CAZyme Description: Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family)

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
639		70106.90	6.1504

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PramorumPr-102	15743	N/A	251	15492

• Gene Location: location=PramPr-102_SC0058:55377-57774(-)

Full Sequence      

MSSTERSSLLHPGVSTRIGRRTRLLVSGVALLLLFAGFVACVSIVLRLLHPPLPALPLTP
LVLAQEFDAIVIGGGPAGSVVTKLLSDDKWRRVLLIEAGNASQTQLGGKDAIPSPLNEQQ
LTPFDVPFYWTNVANTPSLHWAYPDVNVAKALGGCGIHNAMLYVRALPSDLERWQMQGWT
WERTLEIYMSIEDYDGPNSSFHSTRGFVRTSKPAMKMDFSSDFLEACEELGIPRTDDFNA
PGGRYGAGYYHFNTRDGVRESAAKAFLGPMLDSKTAQSTRSNFQLMLDTTVTRIRINEQN
VTEGVEVRYGNGTVQLIRLAAHGEVIVTAGAINTPKILMLSGLGNRDTLKKAGLPLKKHL
PRVGMNLQDHPVVGMTFECEAARVVDLQSDLDSYFKATNAKHPNASSFGLFGTAGISVGA
FLIPPGATLPEIQLTLFPKKSEPHMSNSAALDHVHEVVVTIALLHPLARNRVVLIHDDDD
SVDDNDIDDHLIPRIVSEVPEFEPEHLREGDVWKISWAIGVVRDIMGKLAEKDLIGREIA
PGIGITSSKDLDEWVLNSVFRNSHWVGSASMGKSEDDGVVDDHLRVFGIKNLRVADASII
PLIPNGNVHSSVVMVANRAAEILREDEAEYRRRRAEHTD

Enzyme Prediction     

No EC number prediction in PSURA_81256T0-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA3	65	626	1.3e-106	0.9982394366197183

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
235000	PRK02106	6.85e-85	65	624	4	532	choline dehydrogenase; Validated
225186	BetA	1.08e-84	64	626	5	536	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
366272	GMC_oxred_N	2.27e-29	149	372	24	218	GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
398739	GMC_oxred_C	1.41e-25	511	619	30	143	GMC oxidoreductase. This domain found associated with pfam00732.
215420	PLN02785	3.49e-11	67	625	56	579	Protein HOTHEAD

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ22502.1|AA3_2	0.0	5	638	25	654
QWC20507.1|AA3_2	5.79e-61	65	625	4	526
BDA51473.1|AA3	1.32e-57	64	623	47	600
CAB3230510.1|AA3_2	5.29e-54	66	627	24	559
AWP09430.1|AA3_2	1.08e-50	66	624	19	551

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6ZH7_A	1.65e-53	64	623	5	560	Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YS2_AAA	3.14e-53	62	623	3	560	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
6YS1_AAA	4.32e-53	62	623	3	560	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
6YRU_AAA	4.32e-53	62	623	3	560	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
5NCC_A	5.66e-53	62	623	19	576	Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q8D3K2|BETA_VIBVU	7.62e-59	65	623	3	530	Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=betA PE=3 SV=1
sp|Q7MF12|BETA_VIBVY	2.81e-58	65	623	3	530	Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=betA PE=3 SV=1
sp|Q8NE62|CHDH_HUMAN	5.37e-58	65	624	39	572	Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
sp|A0A248QE08|FAP_CHLVA	7.30e-52	62	623	79	636	Fatty acid photodecarboxylase, chloroplastic OS=Chlorella variabilis OX=554065 GN=FAP PE=1 SV=1
sp|Q985M5|BETA_RHILO	2.44e-51	66	621	3	524	Oxygen-dependent choline dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=betA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000002	0.000032

TMHMM  Annotations     

Start	End
24	46