logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PSURA_78167T0-p1

You are here: Home > Sequence: PSURA_78167T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora ramorum
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora ramorum
CAZyme ID PSURA_78167T0-p1
CAZy Family GH3
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
284 30201.37 4.0887
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PramorumPr-102 15743 N/A 251 15492
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PSURA_78167T0-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 3 254 1.7e-70 0.926530612244898

CDD Domains      help

PSURA_78167T0-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.28e-135 1 284 11 301
5.18e-135 1 284 11 301
5.18e-135 1 284 11 301
1.01e-134 1 283 8 300
1.53e-134 2 283 12 301

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.33e-19 13 187 1 172
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PSURA_78167T0-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.768814 0.231201

TMHMM  Annotations      help

There is no transmembrane helices in PSURA_78167T0-p1.