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CAZyme Information: PSURA_77715T0-p1

You are here: Home > Sequence: PSURA_77715T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora ramorum
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora ramorum
CAZyme ID PSURA_77715T0-p1
CAZy Family GH3
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
443 PramPr-102_SC0026|CGC1 47709.58 4.6204
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PramorumPr-102 15743 N/A 251 15492
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 129 321 1.5e-78 0.983957219251337

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 4.30e-31 129 318 2 184
Amb_all domain.
226384 PelB 9.47e-12 144 385 102 339
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 1.78e-08 132 318 23 209
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
9.01e-160 23 404 20 399
8.44e-158 23 404 20 399
3.67e-154 24 404 21 399
2.08e-145 46 404 134 490
6.66e-137 23 391 20 390

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
8.46e-81 28 361 5 319
Pectin Lyase A [Aspergillus niger]
2.64e-79 26 402 3 358
Pectin Lyase B [Aspergillus niger]
1.28e-76 28 361 5 319
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.21e-97 26 365 23 343
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
2.97e-96 26 363 23 343
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
2.97e-96 26 363 23 343
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
9.69e-95 26 363 24 344
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
9.69e-95 26 363 24 344
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.016531 0.983428 CS pos: 24-25. Pr: 0.8245

TMHMM  Annotations      download full data without filtering help

Start End
5 27