logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PSURA_77291T0-p1

You are here: Home > Sequence: PSURA_77291T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora ramorum
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora ramorum
CAZyme ID PSURA_77291T0-p1
CAZy Family GH3
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
252 27357.35 5.2368
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PramorumPr-102 15743 N/A 251 15492
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PSURA_77291T0-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 9 235 3.7e-69 0.9224489795918367

CDD Domains      help

PSURA_77291T0-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.74e-151 1 251 1 264
3.63e-148 1 251 1 262
1.41e-145 1 251 1 262
2.84e-145 1 251 1 262
2.33e-144 1 251 1 262

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.20e-17 22 191 1 171
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PSURA_77291T0-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000234 0.999747 CS pos: 21-22. Pr: 0.9789

TMHMM  Annotations      help

There is no transmembrane helices in PSURA_77291T0-p1.