CAZyme Information: PSURA_76304T0-p1

Basic Information

• Species: Phytophthora ramorum
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora ramorum
• CAZyme ID: PSURA_76304T0-p1
• CAZy Family: GH17
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
742	PramPr-102_SC0017|CGC1	80863.53	3.8878

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PramorumPr-102	15743	N/A	251	15492

• Gene Location: location=PramPr-102_SC0017:323454-325682(+)

Full Sequence      

MTRMALGVAFALVGTASGSTSYTTKSGILPWVDPDTPSSAQTYTSSRGDTWTLTMSDEFN
VEGRSFEAGDDHLWTALEKADGVNSALEVYSKNMTGTECDSNDNCYFYINTTDETIEETV
WNNYISPPGYETVYFYYRSGMVQSWNKFCFQGGMIEVKVQLPGAVTNDSGNPDVETGSTT
VRAANIDYYPTWPGIWLMGNLGRAIFSASTSSMWPYTYNECNETIFDSQNQRISACDNDP
GSGLNANQGRGAPEIDILEGGGTAISSSIQVGPGMPDDFRMLEDNTTSSSYCFYGYDCTT
EGANNQDVPTEYYWNLRGHKSWYQGLRYGANNICDVEEDDVQSFATINASLAEGITDNAC
TMELCPASYDVNGDMGYVDNGTVHWGINTNGTCFPKQNAYMGAYLCSPGNTDSECTASSG
STSSSSEFSYQMDAVSTDWEVHMAAYLDWVTYTVEWVTGDYGYVRWEVENQVIFEIPAEA
LTNPPQDTAQMNPKKIMIEEPMYVIFNVALSSSWGSSPPNAGSGSCRGDGSSSADNAICD
SFPMYLKIDYIRLYQDVSDTTDMAIGCDPSSHPTKQWIEDNIGDYTDTDNPDTSVSGMAF
CNSDDDCTVGTSSVITGTCNSDGRCECSSDSWTGPRCTEVASASDDETLFGPPLLVSIIV
AIVIIAVAVCVIVYKRRESKRILSKAQEQQAATEQIKELNKTASMMAEASTSKGEKSASV
AWNAEASGSKTDKRDDYTTNFV

Enzyme Prediction     

EC	-	-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH16	57	282	1.4e-62	0.6073619631901841

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
397841	SKN1	1.41e-59	32	585	98	476	Beta-glucan synthesis-associated protein (SKN1). This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules.
185689	GH16_fungal_KRE6_glucanase	4.65e-51	53	555	1	295	Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
225182	BglS	2.45e-08	32	221	30	156	Beta-glucanase, GH16 family [Carbohydrate transport and metabolism].
185693	GH16_laminarinase_like	6.60e-08	448	554	159	235	Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
185693	GH16_laminarinase_like	7.96e-04	56	200	2	103	Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ27996.1|GH16	0.0	15	658	23	667
UIZ28151.1|GH16	5.49e-272	13	658	22	686
UIZ27810.1|GH16	6.42e-269	19	658	62	717
UIZ28149.1|GH16	9.53e-268	21	658	28	684
CCA16055.1|GH16_2	1.91e-251	22	658	48	686

PDB Hits     

PSURA_76304T0-p1 has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|P33336|SKN1_YEAST	1.01e-38	32	621	359	765	Beta-glucan synthesis-associated protein SKN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SKN1 PE=1 SV=1
sp|P32486|KRE6_YEAST	1.44e-36	32	621	307	713	Beta-glucan synthesis-associated protein KRE6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=KRE6 PE=1 SV=2
sp|O13941|YEPB_SCHPO	1.16e-32	32	599	219	614	Uncharacterized beta-glucan synthesis-associated protein C23H3.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC23H3.11c PE=3 SV=1
sp|P87024|SKN1_CANAX	1.15e-31	32	273	336	549	Beta-glucan synthesis-associated protein SKN1 OS=Candida albicans OX=5476 GN=SKN1 PE=2 SV=1
sp|P87023|KRE6_CANAX	3.37e-29	32	585	332	717	Beta-glucan synthesis-associated protein KRE6 OS=Candida albicans OX=5476 GN=KRE6 PE=2 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000318	0.999654	CS pos: 18-19. Pr: 0.9766

TMHMM  Annotations     

Start	End
652	674