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CAZyme Information: PSURA_75226T0-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytophthora ramorum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora ramorum | |||||||||||
| CAZyme ID | PSURA_75226T0-p1 | |||||||||||
| CAZy Family | GH140 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.10:1 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 123 | 316 | 3.8e-78 | 0.9946524064171123 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 8.07e-25 | 122 | 318 | 2 | 190 | Amb_all domain. |
| 226384 | PelB | 4.35e-07 | 123 | 377 | 84 | 335 | Pectate lyase [Carbohydrate transport and metabolism]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 7.89e-197 | 1 | 450 | 1 | 441 | |
| 3.20e-196 | 1 | 450 | 1 | 441 | |
| 7.46e-190 | 1 | 332 | 1 | 331 | |
| 4.13e-189 | 8 | 383 | 8 | 383 | |
| 8.31e-189 | 8 | 383 | 8 | 383 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 8.74e-76 | 24 | 359 | 4 | 323 | Pectin Lyase B [Aspergillus niger] |
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| 3.27e-72 | 25 | 359 | 5 | 322 | Pectin Lyase A [Aspergillus niger] |
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| 1.55e-69 | 25 | 359 | 5 | 322 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
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| 7.80e-07 | 104 | 315 | 56 | 288 | Chain A, Pectate lyase A [Dickeya chrysanthemi],1OOC_B Chain B, Pectate lyase A [Dickeya chrysanthemi],1PE9_A Chain A, Pectate lyase A [Dickeya chrysanthemi],1PE9_B Chain B, Pectate lyase A [Dickeya chrysanthemi] |
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| 1.83e-06 | 104 | 315 | 56 | 288 | Chain A, Pectate lyase [Dickeya chrysanthemi],1JRG_B Chain B, Pectate lyase [Dickeya chrysanthemi],1JTA_A Chain A, pectate lyase A [Dickeya chrysanthemi] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6.57e-94 | 8 | 377 | 7 | 373 | Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1 |
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| 6.57e-94 | 8 | 377 | 7 | 373 | Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2 |
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| 3.65e-88 | 8 | 387 | 7 | 362 | Pectin lyase 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pel2 PE=1 SV=1 |
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| 3.65e-88 | 8 | 387 | 7 | 362 | Probable pectin lyase D OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelD PE=3 SV=1 |
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| 8.90e-88 | 9 | 359 | 10 | 345 | Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000213 | 0.999769 | CS pos: 21-22. Pr: 0.9786 |