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CAZyme Information: PSK38751.1

You are here: Home > Sequence: PSK38751.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species [Candida] pseudohaemulonis
Lineage Ascomycota; Saccharomycetes; ; Debaryomycetaceae; Candida; [Candida] pseudohaemulonis
CAZyme ID PSK38751.1
CAZy Family GH72
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
618 PYFQ01000005|CGC2 70279.06 8.4652
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_CpseudohaemuloniiB12108 5285 N/A 151 5134
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 2.4.1.-:14

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT50 138 378 7.6e-72 0.8473282442748091

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
206775 RNase_PH_RRP41 5.34e-122 390 609 1 220
RRP41 subunit of eukaryotic exosome. The RRP41 subunit of eukaryotic exosome is a member of the RNase_PH family, named after the bacterial Ribonuclease PH, a 3'-5' exoribonuclease. Structurally all members of this family form hexameric rings (trimers of Rrp41-Rrp45, Rrp46-Rrp43, and Mtr3-Rrp42 dimers). The eukaryotic exosome core is composed of six individually encoded RNase PH-like subunits and three additional proteins (Rrp4, Csl4 and Rrp40) that form a stable cap and contain RNA-binding domains. The RNase PH-like subunits are no longer phosphorolytic enzymes, the exosome directly associates with Rrp44 and Rrp6, hydrolytic exoribonucleases related to bacterial RNase II/R and RNase D. The exosome plays an important role in RNA turnover. It plays a crucial role in the maturation of stable RNA species such as rRNA, snRNA and snoRNA, quality control of mRNA, and the degradation of RNA processing by-products and non-coding transcripts.
178434 PLN02841 1.67e-72 3 377 6 375
GPI mannosyltransferase
223761 Rph 5.25e-67 384 608 1 227
Ribonuclease PH [Translation, ribosomal structure and biogenesis].
252941 Mannosyl_trans 9.10e-66 138 378 1 220
Mannosyltransferase (PIG-M). PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilize nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates.
235187 PRK03983 2.12e-41 389 605 12 227
exosome complex exonuclease Rrp41; Provisional

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 609 1 609
1.28e-302 3 609 4 624
4.04e-160 3 377 4 379
3.41e-156 3 377 4 379
1.37e-155 3 377 4 379

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.26e-98 380 609 1 231
Cryo-EM structure of yeast cytoplasmic exosome [Saccharomyces cerevisiae],6LQS_R1 Chain R1, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C],7AJT_EC Chain EC, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C],7AJU_EC Chain EC, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C],7D4I_R1 Chain R1, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C]
1.34e-98 380 609 3 233
Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA [Saccharomyces cerevisiae S288C],5C0W_B Structure of a 12-subunit nuclear exosome complex bound to single-stranded RNA substrates [Saccharomyces cerevisiae S288C],5C0X_B Structure of a 12-subunit nuclear exosome complex bound to structured RNA [Saccharomyces cerevisiae S288C],6FSZ_BB Chain BB, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C]
1.39e-98 380 609 4 234
Structure of a cytoplasmic 11-subunit RNA exosome complex including Ski7, bound to RNA [Saccharomyces cerevisiae S288C],5OKZ_B Crystal Strucrure of the Mpp6 Exosome complex [Saccharomyces cerevisiae S288C],5OKZ_L Crystal Strucrure of the Mpp6 Exosome complex [Saccharomyces cerevisiae S288C],5OKZ_V Crystal Strucrure of the Mpp6 Exosome complex [Saccharomyces cerevisiae S288C],5OKZ_f Crystal Strucrure of the Mpp6 Exosome complex [Saccharomyces cerevisiae S288C]
1.44e-98 380 609 5 235
Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA [Saccharomyces cerevisiae S288C],5K36_B Structure of an eleven component nuclear RNA exosome complex bound to RNA [Saccharomyces cerevisiae S288C],5VZJ_B STRUCTURE OF A TWELVE COMPONENT MPP6-NUCLEAR RNA EXOSOME COMPLEX BOUND TO RNA [Saccharomyces cerevisiae S288C]
2.50e-98 380 609 1 231
yeast rrp44 nuclease [Saccharomyces cerevisiae]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.44e-126 1 379 2 368
GPI mannosyltransferase 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=GPI14 PE=3 SV=2
1.44e-114 6 379 5 356
GPI mannosyltransferase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=GPI14 PE=3 SV=1
6.46e-98 380 609 1 231
Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SKI6 PE=1 SV=1
1.52e-87 12 378 12 344
GPI mannosyltransferase 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=GPI14 PE=3 SV=1
8.98e-84 2 378 3 353
GPI mannosyltransferase 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=GPI14 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000012 0.000013

TMHMM  Annotations      download full data without filtering help

Start End
7 26
61 83
170 192
207 229
340 359