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CAZyme Information: PSK38751.1

You are here: Home > Sequence: PSK38751.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species [Candida] pseudohaemulonis
Lineage Ascomycota; Saccharomycetes; ; Debaryomycetaceae; Candida; [Candida] pseudohaemulonis
CAZyme ID PSK38751.1
CAZy Family GH72
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
618 PYFQ01000005|CGC2 70279.06 8.4652
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_CpseudohaemuloniiB12108 5285 N/A 151 5134
Gene Location Start: 572736; End:574865  Strand: -

Full Sequence      Download help

MKITTEQLFI  LGVLLRIGFF  LFGLFQDKYM  AVRYTDIDYV  VFSDAAKYVA  DDKSPYQRET60
YRYTPMLAWI  LLPVTFGGNW  VHYGKALFML  CDIITGALIT  EIVKKETPGS  STKDTFFQRN120
KTTILSAIWL  LNPMVITIST  RGSSESVLSC  FIMLAVANLF  RDQYIMSALF  LGLSIHFKIY180
PIIYLPSIML  FLASKKPLLI  KAWQNIPFLG  WVNTANLSYL  VATLVSFAVP  TYLMYDFYGY240
EFLYHSYLYH  LTRLDHRHNF  SLYNLALYLK  SAQDYLPQNL  DSENFLTIAL  QSIEKAAFAP300
QIVLSGLVIP  LVLARRNLTA  CLFIQTLTFV  TFNKVMTSQY  FIWFLIFLPS  YLATSQLLSK360
LNARKGSLML  LLWIASQASM  SRMELYSPEG  LRIDGRRWNE  LRRFECQINT  HPHSSDGSSY420
VEHGNTKVMC  IVKGPMEPRT  RAQQDQDNAT  LDININVASF  STLERKKRSK  NEKRLIELKT480
TLERTFEKSV  LTHLYPKTLI  EISVQVLAQD  GGMLATITNA  ITLALIDAGI  SIYDYVSAVT540
VGLHDQTPLL  DLNTLEEGDV  SNLTVGVVGK  SEKLAMLLLE  DKMPLDHLES  VLGIAIAGSH600
KVRELLDEEQ  SYKVKFKV618

Enzyme Prediction      help

EC 2.4.1.-:14

CAZyme Signature Domains help

Created with Snap3061921231541852162472783093393704014324634945255565871223GT50
Family Start End Evalue family coverage
GT50 138 378 7.6e-72 0.8473282442748091

CDD Domains      download full data without filtering help

Created with Snap306192123154185216247278309339370401432463494525556587390609RNase_PH_RRP413377PLN02841384608Rph138378Mannosyl_trans389605PRK03983
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
206775 RNase_PH_RRP41 5.34e-122 390 609 1 220
RRP41 subunit of eukaryotic exosome. The RRP41 subunit of eukaryotic exosome is a member of the RNase_PH family, named after the bacterial Ribonuclease PH, a 3'-5' exoribonuclease. Structurally all members of this family form hexameric rings (trimers of Rrp41-Rrp45, Rrp46-Rrp43, and Mtr3-Rrp42 dimers). The eukaryotic exosome core is composed of six individually encoded RNase PH-like subunits and three additional proteins (Rrp4, Csl4 and Rrp40) that form a stable cap and contain RNA-binding domains. The RNase PH-like subunits are no longer phosphorolytic enzymes, the exosome directly associates with Rrp44 and Rrp6, hydrolytic exoribonucleases related to bacterial RNase II/R and RNase D. The exosome plays an important role in RNA turnover. It plays a crucial role in the maturation of stable RNA species such as rRNA, snRNA and snoRNA, quality control of mRNA, and the degradation of RNA processing by-products and non-coding transcripts.
178434 PLN02841 1.67e-72 3 377 6 375
GPI mannosyltransferase
223761 Rph 5.25e-67 384 608 1 227
Ribonuclease PH [Translation, ribosomal structure and biogenesis].
252941 Mannosyl_trans 9.10e-66 138 378 1 220
Mannosyltransferase (PIG-M). PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilize nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates.
235187 PRK03983 2.12e-41 389 605 12 227
exosome complex exonuclease Rrp41; Provisional

CAZyme Hits      help

Created with Snap3061921231541852162472783093393704014324634945255565871609QWU88835.1|GT503609QWW23894.1|GT503377QRG39151.1|GT503377QEO20435.1|GT503377QEL61505.1|GT50
Hit ID E-Value Query Start Query End Hit Start Hit End
QWU88835.1|GT50 0.0 1 609 1 609
QWW23894.1|GT50 1.28e-302 3 609 4 624
QRG39151.1|GT50 4.04e-160 3 377 4 379
QEO20435.1|GT50 3.41e-156 3 377 4 379
QEL61505.1|GT50 1.37e-155 3 377 4 379

PDB Hits      download full data without filtering help

Created with Snap3061921231541852162472783093393704014324634945255565873806095G06_B3806094IFD_B3806095JEA_B3806094OO1_B3806092WP8_B
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5G06_B 1.26e-98 380 609 1 231
Cryo-EM structure of yeast cytoplasmic exosome [Saccharomyces cerevisiae],6LQS_R1 Chain R1, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C],7AJT_EC Chain EC, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C],7AJU_EC Chain EC, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C],7D4I_R1 Chain R1, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C]
4IFD_B 1.34e-98 380 609 3 233
Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA [Saccharomyces cerevisiae S288C],5C0W_B Structure of a 12-subunit nuclear exosome complex bound to single-stranded RNA substrates [Saccharomyces cerevisiae S288C],5C0X_B Structure of a 12-subunit nuclear exosome complex bound to structured RNA [Saccharomyces cerevisiae S288C],6FSZ_BB Chain BB, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C]
5JEA_B 1.39e-98 380 609 4 234
Structure of a cytoplasmic 11-subunit RNA exosome complex including Ski7, bound to RNA [Saccharomyces cerevisiae S288C],5OKZ_B Crystal Strucrure of the Mpp6 Exosome complex [Saccharomyces cerevisiae S288C],5OKZ_L Crystal Strucrure of the Mpp6 Exosome complex [Saccharomyces cerevisiae S288C],5OKZ_V Crystal Strucrure of the Mpp6 Exosome complex [Saccharomyces cerevisiae S288C],5OKZ_f Crystal Strucrure of the Mpp6 Exosome complex [Saccharomyces cerevisiae S288C]
4OO1_B 1.44e-98 380 609 5 235
Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA [Saccharomyces cerevisiae S288C],5K36_B Structure of an eleven component nuclear RNA exosome complex bound to RNA [Saccharomyces cerevisiae S288C],5VZJ_B STRUCTURE OF A TWELVE COMPONENT MPP6-NUCLEAR RNA EXOSOME COMPLEX BOUND TO RNA [Saccharomyces cerevisiae S288C]
2WP8_B 2.50e-98 380 609 1 231
yeast rrp44 nuclease [Saccharomyces cerevisiae]

Swiss-Prot Hits      download full data without filtering help

Created with Snap3061921231541852162472783093393704014324634945255565871379sp|Q6BHI9|GPI14_DEBHA6379sp|Q5AMR5|GPI14_CANAL380609sp|P46948|RRP41_YEAST12378sp|Q6CRE7|GPI14_KLULA2378sp|Q6FXQ5|GPI14_CANGA
Hit ID E-Value Query Start Query End Hit Start Hit End Description
sp|Q6BHI9|GPI14_DEBHA 2.44e-126 1 379 2 368
GPI mannosyltransferase 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=GPI14 PE=3 SV=2
sp|Q5AMR5|GPI14_CANAL 1.44e-114 6 379 5 356
GPI mannosyltransferase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=GPI14 PE=3 SV=1
sp|P46948|RRP41_YEAST 6.46e-98 380 609 1 231
Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SKI6 PE=1 SV=1
sp|Q6CRE7|GPI14_KLULA 1.52e-87 12 378 12 344
GPI mannosyltransferase 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=GPI14 PE=3 SV=1
sp|Q6FXQ5|GPI14_CANGA 8.98e-84 2 378 3 353
GPI mannosyltransferase 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=GPI14 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000012 0.000013

TMHMM  Annotations      download full data without filtering help

Start End
7 26
61 83
170 192
207 229
340 359