CAZyme Information: PPTG_24903-t26_1-p1

Basic Information

• Species: Phytophthora parasitica
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
• CAZyme ID: PPTG_24903-t26_1-p1
• CAZy Family: PL3
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
696		74873.20	5.7130

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PparasiticaINRA-310	23240	761204	119	23121

• Gene Location: location=KI669914:978-5878(-)

Full Sequence      

MVRVHLALAAALALIADCASAFTIGSPEGLAAGTTGGANGKTVYPTSNSELVNYLASNDP
LVIVLNKAFDFRGTEGTTTETGCRPDYTRECMAKNNGYKSQDVIIQGGNMATTGGCTGGT
KVTVKYDNAALKRMTVLGNKTIRGIGKSGVIKGKGLTLAGDNIIVQNVHITELNHHLVWG
GDAIYMQGTNGGSTAMKKIWLDHIKISRVGRQFITTNKASTDSMTISNSDFDGNTDYSAT
CDGHHYWSFIFYGVTKFSMLNNYIHGTSGRSPKIGGEAEAKVVAHVANNFWGNNTGHSFE
IGENAWVLAEGNYFSNTRMPLFTGTNGALYAASSSDECSNYLGRSCAANTLTDSGSFDSR
NGGTALNMIKGVSTCVNYKPDAAETTSGSQQQQQQQSSQSNESQQQSSQASDTTQQQQSS
QNSDSEQQQRVQTSGSVQQESQSRKLAVQTSDLEKEWQQTTGNFGFLTTNLASTDSMTIS
NSDFDGNTDYSASCDGHHYWSFIFYGVTRFSMLNNYVHGTSGRSPKIGGEAEAHVVAHVA
NNYWGNNSGHSFEIGANAWVLAEDNYFSNTRMPLFNKTDDGALYTVDNDDECTKYLGRAC
KANVLVDSGIFPSRNGETALETIKTVPIFVDYSTGSTQASDSRQQSSGMEEQQQVQQSVP
GTVKPLAETKPASIQSKDVESVWVKTSDNFGVGKLE

Enzyme Prediction     

EC	4.2.2.10:1	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	123	316	2.8e-78	0.9946524064171123
PL1	466	569	1.9e-35	0.5454545454545454

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	3.79e-32	121	318	1	190	Amb_all domain.
226384	PelB	9.43e-14	26	321	40	280	Pectate lyase [Carbohydrate transport and metabolism].
214765	Amb_all	1.19e-09	475	571	92	190	Amb_all domain.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ACR19258.1|PL1_4	6.90e-218	1	331	1	331
ADN18834.1|PL1_4	2.08e-189	8	383	8	384
AHX74068.1|PL1_4	2.94e-189	8	383	8	384
AHX74069.1|PL1_4	5.76e-174	1	465	1	436
ADN18835.1|PL1_4	2.32e-173	1	465	1	436

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1QCX_A	8.77e-74	24	382	4	346	Pectin Lyase B [Aspergillus niger]
1IDK_A	7.11e-71	25	357	5	321	Pectin Lyase A [Aspergillus niger]
1IDJ_A	5.46e-69	25	357	5	321	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q2UJA7|PELF_ASPOR	3.78e-88	1	355	1	341	Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
sp|B8N316|PELF_ASPFN	3.78e-88	1	355	1	341	Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
sp|Q0CZD4|PELF2_ASPTN	5.87e-83	1	363	1	347	Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
sp|A2R6A1|PELF_ASPNC	1.03e-82	5	355	6	342	Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
sp|Q8NJK6|PELF_ASPNG	1.03e-82	5	355	6	342	Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000245	0.999722	CS pos: 21-22. Pr: 0.9408

TMHMM  Annotations     

There is no transmembrane helices in PPTG_24903-t26_1-p1.