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CAZyme Information: PPTG_23285-t26_1-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytophthora parasitica | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica | |||||||||||
| CAZyme ID | PPTG_23285-t26_1-p1 | |||||||||||
| CAZy Family | PL3 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.10:1 | 4.2.2.10:1 | 4.2.2.10:1 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 635 | 825 | 4.7e-80 | 0.983957219251337 |
| PL1 | 121 | 293 | 5.9e-35 | 0.9108910891089109 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 5.99e-37 | 126 | 294 | 1 | 190 | Amb_all domain. |
| 214765 | Amb_all | 3.90e-36 | 634 | 828 | 1 | 190 | Amb_all domain. |
| 226384 | PelB | 3.57e-17 | 546 | 830 | 36 | 279 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 226384 | PelB | 1.00e-14 | 131 | 338 | 91 | 319 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 8.14e-12 | 130 | 290 | 23 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 3.44e-256 | 345 | 1034 | 1 | 627 | |
| 2.31e-178 | 540 | 913 | 26 | 408 | |
| 1.56e-170 | 540 | 854 | 32 | 346 | |
| 6.69e-112 | 542 | 909 | 25 | 398 | |
| 9.36e-112 | 542 | 909 | 25 | 398 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.53e-81 | 540 | 880 | 3 | 335 | Pectin Lyase B [Aspergillus niger] |
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| 6.86e-77 | 540 | 871 | 3 | 325 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
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| 1.26e-75 | 540 | 871 | 3 | 325 | Pectin Lyase A [Aspergillus niger] |
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| 1.50e-08 | 130 | 305 | 69 | 293 | Chain A, PECTATE LYASE E [Dickeya chrysanthemi] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 9.56e-96 | 539 | 911 | 22 | 384 | Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1 |
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| 9.56e-96 | 539 | 911 | 22 | 384 | Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2 |
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| 1.25e-92 | 540 | 917 | 23 | 392 | Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1 |
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| 3.76e-85 | 540 | 888 | 18 | 366 | Probable pectin lyase E OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelE PE=3 SV=1 |
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| 2.68e-84 | 540 | 888 | 18 | 366 | Probable pectin lyase F OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pelF PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.003362 | 0.996602 | CS pos: 28-29. Pr: 0.9528 |