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CAZyme Information: PPTG_18550-t26_1-p1

You are here: Home > Sequence: PPTG_18550-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora parasitica
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
CAZyme ID PPTG_18550-t26_1-p1
CAZy Family GT60
CAZyme Description hypothetical protein, variant 2
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
432 48697.30 9.5987
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PparasiticaINRA-310 23240 761204 119 23121
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PPTG_18550-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT19 1 396 6e-76 0.8700564971751412

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
234580 lpxB 4.05e-71 1 429 41 375
lipid-A-disaccharide synthase; Reviewed
223834 LpxB 4.45e-67 1 389 41 350
Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis].
397004 LpxB 1.76e-54 4 398 40 358
Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide.
129319 lpxB 1.65e-35 1 382 45 345
lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
167141 lpxB 1.11e-27 1 415 266 603
lipid-A-disaccharide synthase; Reviewed

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.72e-48 8 378 90 403
2.72e-48 8 378 90 403
2.72e-48 8 378 90 403
2.72e-48 8 378 90 403
3.94e-48 1 408 93 444

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.57e-25 3 382 47 345
Lipid A Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)]
3.57e-25 3 382 47 345
Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.01e-44 1 392 80 414
Probable lipid-A-disaccharide synthase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LPXB PE=2 SV=1
1.00e-43 7 383 48 342
Lipid-A-disaccharide synthase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=lpxB PE=3 SV=1
3.70e-41 1 401 40 358
Lipid-A-disaccharide synthase OS=Rickettsia akari (strain Hartford) OX=293614 GN=lpxB PE=3 SV=1
2.35e-40 8 432 50 386
Lipid-A-disaccharide synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=lpxB PE=3 SV=1
1.36e-39 3 421 42 377
Lipid-A-disaccharide synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=lpxB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000072 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in PPTG_18550-t26_1-p1.