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CAZyme Information: PPTG_18202-t26_1-p1

You are here: Home > Sequence: PPTG_18202-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora parasitica
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
CAZyme ID PPTG_18202-t26_1-p1
CAZy Family GT60
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
245 KI669641|CGC2 25542.25 4.3611
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PparasiticaINRA-310 23240 761204 119 23121
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.55:24 3.2.1.37:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH54 20 231 1.1e-93 0.6835443037974683

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
401229 ArabFuran-catal 3.12e-130 20 237 1 223
Alpha-L-arabinofuranosidase B, catalytic. Members of this family, which are present in fungal alpha-L-arabinofuranosidase B, adopt a beta-sandwich fold similar to that of Concanavalin A-like lectins/glucanase. The beta-sandwich fold consists of two anti-parallel beta-sheets with seven and and six strands, respectively. In addition, there are four helices outside of the beta-strands. The beta-sandwich strands are closely packed and curved with a jelly roll topology, creating a small catalytic pocket. The domain catalyzes the hydrolysis of alpha-1,2-, alpha-1,3- and alpha-1,5-L-arabinofuranosidic bonds in L-arabinose-containing hemicelluloses such as arabinoxylan and L-arabinan.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.97e-116 1 237 1 237
9.46e-99 19 236 40 258
3.94e-98 2 236 67 301
7.70e-98 7 235 1 238
1.10e-97 19 236 41 259

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.31e-89 19 235 2 223
Crystal structure of arabinofuranosidase [Aspergillus luchuensis],1WD4_A Crystal structure of arabinofuranosidase complexed with arabinose [Aspergillus luchuensis],6SXS_AAA Chain AAA, Alpha-L-arabinofuranosidase B [Aspergillus luchuensis]
2.38e-89 19 235 3 224
GH54 a-l-arabinofuranosidase soaked with aziridine inhibitor [Aspergillus luchuensis IFO 4308]
6.53e-89 19 235 2 223
E221Q mutant of GH54 a-l-arabinofuranosidase soaked with 4-nitrophenyl a-l-arabinofuranoside [Aspergillus luchuensis IFO 4308]
1.84e-88 19 235 2 223
Chain A, alpha-L-arabinofuranosidase B [Aspergillus luchuensis],2D44_A Chain A, alpha-L-arabinofuranosidase B [Aspergillus luchuensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.03e-92 3 244 5 248
Probable alpha-L-arabinofuranosidase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=abfB PE=3 SV=1
1.61e-91 8 235 13 248
Probable alpha-L-arabinofuranosidase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=abfB PE=3 SV=1
2.66e-91 7 235 7 240
Alpha-L-arabinofuranosidase B OS=Aspergillus kawachii (strain NBRC 4308) OX=1033177 GN=abfB PE=1 SV=1
2.66e-91 7 235 7 240
Probable alpha-L-arabinofuranosidase B OS=Aspergillus awamori OX=105351 GN=abfB PE=1 SV=1
3.76e-91 7 235 7 240
Probable alpha-L-arabinofuranosidase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=abfB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000222 0.999754 CS pos: 18-19. Pr: 0.9790

TMHMM  Annotations      help

There is no transmembrane helices in PPTG_18202-t26_1-p1.