logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PPTG_17122-t26_1-p1

You are here: Home > Sequence: PPTG_17122-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora parasitica
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
CAZyme ID PPTG_17122-t26_1-p1
CAZy Family GT4
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
204 22655.38 6.2219
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PparasiticaINRA-310 23240 761204 119 23121
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PPTG_17122-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 19 193 2.5e-50 0.7061224489795919

CDD Domains      help

PPTG_17122-t26_1-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.66e-145 1 204 1 204
8.28e-123 1 203 1 200
3.49e-122 1 203 1 203
1.19e-101 1 203 1 201
1.19e-101 1 203 1 201

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.71e-23 95 186 70 171
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PPTG_17122-t26_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000255 0.999715 CS pos: 27-28. Pr: 0.9748

TMHMM  Annotations      help

There is no transmembrane helices in PPTG_17122-t26_1-p1.