CAZyme Information: PPTG_15928-t26_1-p1

Basic Information

• Species: Phytophthora parasitica
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
• CAZyme ID: PPTG_15928-t26_1-p1
• CAZy Family: GT22
• CAZyme Description: choline dehydrogenase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
585	KI669609|CGC1	64491.56	7.1588

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PparasiticaINRA-310	23240	761204	119	23121

• Gene Location: location=KI669609:185008-186823(+)

Full Sequence      

MMLRHTLRRGNAALTSSSRALSSIATSREFDYVIVGAGSAGCVLANRLSADPNNKVLVVE
AGPSDRNRWDSFLIEIPAAIPINLADKRYNWHFATEPQQFLNNRRIGYHSGRVLGGSSSL
NAMMYTRGHAKDYDEWQSKGAEGWSYADCLPYFKRSQNHQLGGDDYRGGNGPLHVVRNTQ
KDQPLFQAFLDASVQAGYPFTDDLNGYQQEGFGWHDLTIHEGKRWSTSAAFLHPVMDREN
LTVITDTYVNKVLFDGKKAVGIEVEDSKTKTVSKISTAKEVILSGGAINTPQVLMLSGVG
DADDLKEVGVPLVHHLPAVGQNMEDHIGVNLQFACKQPITLYNASKRYPRNVLKIGYEWW
TSKTGPGASPHCEVGGFIRTAPGKEQPDLQVIFSPCAVDHRCQLREDIGHAMSGHISLMR
GSNNGTLKLRSANPRDYPSIDPKYMADEESRLTLREGVKLTREIFSQHAFEEFSGEGISP
KNSVQSDDEIDAWLRKRAGAEFHVSCTARMGVDDNSVVDPQTRVHGLEGLRVVDASVMPN
IVSGNTNAAVIMIAEKAADMILGKPALPKDNASVYHAKNWQTSQR

Enzyme Prediction     

No EC number prediction in PPTG_15928-t26_1-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA3	29	562	1.3e-165	0.9929577464788732

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
225186	BetA	0.0	25	567	3	539	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000	PRK02106	0.0	26	585	2	555	choline dehydrogenase; Validated
366272	GMC_oxred_N	1.11e-56	102	326	15	216	GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
398739	GMC_oxred_C	1.46e-42	425	557	5	143	GMC oxidoreductase. This domain found associated with pfam00732.
215420	PLN02785	5.47e-35	16	562	42	577	Protein HOTHEAD

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ28087.1|AA3_2	1.09e-268	2	585	1	581
CAB3230510.1|AA3_2	2.39e-208	7	579	10	573
AWP09430.1|AA3_2	6.08e-200	29	575	19	564
ANI26486.1|AA3_2	1.39e-198	29	584	70	624
CEF60566.1|AA3_2	4.85e-166	32	570	35	577

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5NCC_A	7.87e-98	22	567	16	582	Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis]
6YS2_AAA	1.02e-97	28	567	6	566	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
6ZH7_A	1.43e-97	27	567	5	566	Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YRU_AAA	2.01e-97	28	567	6	566	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YS1_AAA	2.01e-97	28	567	6	566	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q8BJ64|CHDH_MOUSE	1.96e-209	18	584	32	596	Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
sp|Q6UPE0|CHDH_RAT	2.17e-209	29	584	45	599	Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
sp|Q8NE62|CHDH_HUMAN	3.64e-204	18	584	27	594	Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
sp|B6I074|BETA_ECOSE	1.31e-171	29	577	2	547	Oxygen-dependent choline dehydrogenase OS=Escherichia coli (strain SE11) OX=409438 GN=betA PE=3 SV=1
sp|A7ZI50|BETA_ECO24	1.31e-171	29	577	2	547	Oxygen-dependent choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=betA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000047	0.000006

TMHMM  Annotations     

There is no transmembrane helices in PPTG_15928-t26_1-p1.