CAZyme Information: PPTG_15927-t26_1-p1

Basic Information

• Species: Phytophthora parasitica
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
• CAZyme ID: PPTG_15927-t26_1-p1
• CAZy Family: GT22
• CAZyme Description: choline dehydrogenase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
590		64782.18	6.8992

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PparasiticaINRA-310	23240	761204	119	23121

• Gene Location: location=KI669609:182734-184562(+)

Full Sequence      

MLRHALRSGNAAVFGHNGLLTAPTRGLASSATSHEYDYVIVGAGSAGCVLANRLSADPSN
KVLLVEAGPSDRNRWDSILIEMPAAVPINLTDERYNWNYFTEPQEFLNNRRIGFPRGRVL
GGSSSINAMVYTRGNAKDYNDWEANGAEGWSYAACLPYFKRSQSHQLGGDDYRGGDGPLH
VVRNTQKDQPLFQAFLDAGVEAGYPFTADLNGYQQEGVGWHDLTIHEGKRWSTSAAFLHP
VMDRENLTVVTDTFVNKLMFEDKKVVGIEVEHNKTKAISKILSGKEVILSGGAINTPQLL
MLSGVGDADHLKEVGVPLVHHLPAVGKNMEDHIGLNLQFACKQPVTLYHATKRFPGKVLK
IGYEWLTSKTGPGASSHCEVGGFIRTAPGKSQPDLQIQFSPSAVDEHYQLREIGHAMSGH
ISLMRGSRDGTIKLRSANPREHPIIDPKYMAEEESRVTLREGVKLTREIFAQNAFKEFCG
EGISPKESVQSDDEIDAWARKYAATEFHVSCTARMGMDDNSVVDAQTRVHGLEGLRIVDA
SIMPNIVSGNTNAPVIMIAEKAADMILGKPALPKDNVPVYQAKNWHTSQR

Enzyme Prediction     

No EC number prediction in PPTG_15927-t26_1-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA3	35	567	4.6e-164	0.9929577464788732

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
225186	BetA	0.0	29	572	1	539	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000	PRK02106	0.0	32	590	2	555	choline dehydrogenase; Validated
366272	GMC_oxred_N	5.29e-54	108	332	15	216	GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
398739	GMC_oxred_C	2.92e-42	429	562	4	143	GMC oxidoreductase. This domain found associated with pfam00732.
215420	PLN02785	2.97e-32	29	567	49	577	Protein HOTHEAD

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ28087.1|AA3_2	8.75e-267	1	590	1	581
CAB3230510.1|AA3_2	4.06e-208	30	584	19	573
AWP09430.1|AA3_2	4.19e-204	35	581	19	565
ANI26486.1|AA3_2	8.42e-204	35	589	70	624
CEF60566.1|AA3_2	2.53e-167	38	575	35	577

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6ZH7_A	2.31e-97	29	572	1	566	Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YRU_AAA	1.27e-96	29	572	1	566	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YS1_AAA	1.27e-96	29	572	1	566	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
5NCC_A	1.93e-96	29	572	17	582	Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis]
6YS2_AAA	2.50e-96	29	572	1	566	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q6UPE0|CHDH_RAT	6.04e-213	28	589	38	599	Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
sp|Q8BJ64|CHDH_MOUSE	3.11e-212	29	589	36	596	Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
sp|Q8NE62|CHDH_HUMAN	2.89e-207	28	589	33	594	Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
sp|A4XPI5|BETA_PSEMY	2.18e-168	33	582	2	549	Oxygen-dependent choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=betA PE=3 SV=1
sp|B4SHV9|BETA_STRM5	2.98e-167	32	582	3	551	Oxygen-dependent choline dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) OX=391008 GN=betA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000039	0.000004

TMHMM  Annotations     

There is no transmembrane helices in PPTG_15927-t26_1-p1.