CAZyme Information: PPTG_15709-t26_1-p1

Basic Information

• Species: Phytophthora parasitica
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
• CAZyme ID: PPTG_15709-t26_1-p1
• CAZy Family: GT20
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
449		47730.44	5.0609

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PparasiticaINRA-310	23240	761204	119	23121

• Gene Location: location=KI669611:207077-208426(+)

Full Sequence      

MARFQYTLAAVLALATSTASAFTIGSPSGLAAGTTGGEGGETVYPTTTSELVQYLNDTEP
LVVVLNQTFDFRGTEGTTTEMGCRPGHKRACLAKNNGFNDQDVILGPGGMNNTGGCTNGT
EVEVTYDNAAIKRMNVKGNKTIRGIGRSGVIMGKGLTLNGDNIIVQNIHITELNPHVVWG
GDALFMQGSNKATTTLNKIWIDHVKVSHVGRQMVVTNKAGVATLTISNSDFDGNTEYSAT
CDGHHYWTFLFYGKNTGVSMLNNYVHSTSGRSPKVGGNPNEHVVVHVANNQWGNNSGHSF
ELGINAYVLAEGNYFDNTKQPLDKGEDGYLYAADDADLCTSYLGRQCAANVLVGSGNFTS
RNGPAALEGLKDLSAITGYSSNSAQTSDSQQQQEQQTQQSNDSEQQQTQQYTPGTAAPSG
ETTQSSIQASDLAKVWGETTDNFGVGKLD

Enzyme Prediction     

EC	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	124	317	2e-81	0.9893048128342246

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	3.28e-33	124	319	2	190	Amb_all domain.
226384	PelB	1.70e-11	97	330	51	292	Pectate lyase [Carbohydrate transport and metabolism].
366158	Pec_lyase_C	2.82e-08	127	315	23	211	Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AHX74069.1|PL1_4	7.40e-235	1	449	1	441
ADN18835.1|PL1_4	3.00e-234	1	449	1	441
AHX74068.1|PL1_4	1.48e-179	4	384	4	384
ADN18834.1|PL1_4	5.98e-179	4	384	4	384
ADN18833.1|PL1_4	2.23e-164	5	385	5	385

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1QCX_A	1.95e-77	24	359	4	323	Pectin Lyase B [Aspergillus niger]
1IDK_A	1.14e-72	25	381	5	345	Pectin Lyase A [Aspergillus niger]
1IDJ_A	1.07e-69	25	381	5	345	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q5BA61|PELB_EMENI	5.65e-88	3	358	2	341	Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1
sp|Q2UJA7|PELF_ASPOR	6.14e-88	8	369	8	353	Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
sp|B8N316|PELF_ASPFN	6.14e-88	8	369	8	353	Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
sp|Q0CZD4|PELF2_ASPTN	6.85e-88	24	360	24	343	Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
sp|Q2TXM4|PELA_ASPOR	7.85e-85	25	359	24	342	Probable pectin lyase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000223	0.999744	CS pos: 21-22. Pr: 0.9791

TMHMM  Annotations     

There is no transmembrane helices in PPTG_15709-t26_1-p1.