CAZyme Information: PPTG_12902-t26_1-p1

Basic Information

• Species: Phytophthora parasitica
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
• CAZyme ID: PPTG_12902-t26_1-p1
• CAZy Family: GH72
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
440		46757.53	9.8141

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PparasiticaINRA-310	23240	761204	119	23121

• Gene Location: location=KI669594:480953-482275(+)

Full Sequence      

STAQVSGTTMQILRFVVVAVAALAMQGTQAAPMGSGNTVQQSPVEQTQQQSSTKQGKTSS
STKISTGKAPGLAAGTTGGGNATPVYPNSLADLKNYLQDSQPRVIVLTKTFDFRGTEGTK
TETGCRPKSNRDCLAKNNGYKGQDVILQSGGMENTGGCVQGTAVKVTYDLAATKNPLLVT
DNKTLRGVGTSGVIKGKGLWIRGNNVIIQNIHITQLNPHLIWGGDAIYIQGLNGGKTPME
RVWLDHVKISNLGRQMIATGSASVKSMTISNSEFDGQTQYSATCDGNHYWTFLFLGTQTQ
VTLANNYVHNTSGRSPKVGGNSVIHAANNYWYSNSGFSYDVVENGNVLLEGNYFESTAIP
NKNDTETVGAIIVPSTSTQTKCKSTLGRNCVENTLVKCGKLSGNRESAALTNSKKVAPYY
QPIAAKRFTTTSQNFGVGPI

Enzyme Prediction     

EC	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	166	355	6.8e-79	0.983957219251337

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	4.57e-34	164	357	2	189	Amb_all domain.
226384	PelB	7.12e-15	139	355	51	274	Pectate lyase [Carbohydrate transport and metabolism].
366158	Pec_lyase_C	1.67e-12	145	354	2	211	Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AHX74067.1|PL1_4	4.99e-254	10	440	1	432
ACR19249.1|PL1_4	2.88e-253	10	440	1	432
ACR19252.1|PL1_4	6.76e-252	10	440	1	432
ACR19255.1|PL1_4	4.92e-216	10	438	1	396
ACR19247.1|PL1_4|4.2.2.10	8.11e-215	10	438	1	396

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1QCX_A	1.81e-68	67	438	5	358	Pectin Lyase B [Aspergillus niger]
1IDK_A	4.65e-65	66	407	4	327	Pectin Lyase A [Aspergillus niger]
1IDJ_A	5.05e-64	66	393	4	313	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q8NJK6|PELF_ASPNG	8.32e-82	66	440	25	383	Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
sp|A2R6A1|PELF_ASPNC	8.32e-82	66	440	25	383	Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
sp|Q0CZD4|PELF2_ASPTN	2.01e-80	67	402	25	342	Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
sp|Q2UJA7|PELF_ASPOR	7.10e-77	71	407	29	349	Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
sp|B8N316|PELF_ASPFN	7.10e-77	71	407	29	349	Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000258	0.999727	CS pos: 30-31. Pr: 0.9769

TMHMM  Annotations     

There is no transmembrane helices in PPTG_12902-t26_1-p1.