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CAZyme Information: PPTG_12899-t26_1-p1

You are here: Home > Sequence: PPTG_12899-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora parasitica
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
CAZyme ID PPTG_12899-t26_1-p1
CAZy Family GH7
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
971 KI669594|CGC1 100859.16 6.8293
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PparasiticaINRA-310 23240 761204 119 23121
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 619 808 6.3e-83 0.983957219251337
PL1 130 320 1e-80 0.983957219251337

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 1.86e-43 619 811 2 190
Amb_all domain.
214765 Amb_all 1.92e-38 129 319 1 186
Amb_all domain.
226384 PelB 6.73e-20 616 807 84 273
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 4.82e-16 604 807 4 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
226384 PelB 8.36e-14 127 348 84 290
Pectate lyase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.20e-261 1 552 1 534
4.89e-181 24 423 190 583
6.23e-166 13 349 19 346
3.70e-145 24 301 19 296
7.85e-129 24 402 21 396

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.78e-82 26 364 3 324
Pectin Lyase B [Aspergillus niger]
8.99e-79 26 368 3 324
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
3.27e-77 26 368 3 324
Pectin Lyase A [Aspergillus niger]
3.24e-08 602 816 48 285
Chain A, PECTATE LYASE E [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.62e-90 514 851 22 344
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
3.62e-90 514 851 22 344
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
4.02e-89 22 423 20 406
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
4.02e-89 22 423 20 406
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
8.79e-88 521 852 29 343
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000266 0.999707 CS pos: 22-23. Pr: 0.9761

TMHMM  Annotations      download full data without filtering help

Start End
5 27