CAZyme Information: PPTG_04818-t26_1-p1

Basic Information

• Species: Phytophthora parasitica
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
• CAZyme ID: PPTG_04818-t26_1-p1
• CAZy Family: CE8
• CAZyme Description: hypothetical protein, variant

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
296	KI669565|CGC2	30767.20	9.4609

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PparasiticaINRA-310	23240	761204	119	23121

• Gene Location: location=KI669565:1563238-1564224(-)

Full Sequence      

MKQLLALLVASCAFAAQAMETLEMSEDVTFDSVVLNGESRKLAGAAVDTTTFPDNYTPGQ
VMAAEDEERAVGVWPTSKGMVPLTRPRTVGPSTPFDGGMKTYKRSNVAFKSGAKMTRANA
VFVVQAGGTLSNVIIAGGGGVFCETHNCALVNVWFKDSVQSALHVNSGTGITTITGGGAR
NVARRVIFGQASGTVVVSGGFYMVNSGRLFESCGTCGPVKRGVIVDGVVSVNPTAELIRM
NSNYNDRGTISKATITTSMANYPVCTRFIGGATPRKVGNGAAPPVCAYSKAGVTVK

Enzyme Prediction     

EC	4.2.2.2:4

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL3	78	268	2.5e-38	0.979381443298969

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
397360	Pectate_lyase	4.01e-33	72	270	2	195	Pectate lyase.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ26062.1|PL3_2	3.22e-106	1	296	1	281
ADN18841.1|PL3_2	1.19e-41	72	295	24	252
ADN18840.1|PL3_2	1.09e-40	59	294	21	259
ADN18837.1|PL3_2	1.82e-38	62	293	24	258
ADN18836.1|PL3_2	1.48e-32	74	290	22	243

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3B90_A	6.95e-08	123	294	36	224	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B90_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
3B4N_A	1.34e-07	123	294	154	342	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B4N_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_A Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q5BA88|PLYD_EMENI	4.22e-31	75	270	43	236	Probable pectate lyase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyD PE=3 SV=1
sp|Q0CJ20|PLYG_ASPTN	1.53e-30	75	290	28	241	Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyG PE=3 SV=1
sp|A1C4B8|PLYE_ASPCL	2.64e-29	49	290	13	249	Probable pectate lyase E OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=plyE PE=3 SV=1
sp|Q0CJ49|PLYD_ASPTN	3.60e-29	75	290	35	248	Probable pectate lyase D OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyD PE=3 SV=1
sp|Q5ATC7|PLYH_EMENI	6.12e-28	75	290	41	255	Pectate lyase H OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyH PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000486	0.999476	CS pos: 18-19. Pr: 0.9573

TMHMM  Annotations     

There is no transmembrane helices in PPTG_04818-t26_1-p1.