logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PPTG_04136-t26_3-p1

You are here: Home > Sequence: PPTG_04136-t26_3-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora parasitica
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
CAZyme ID PPTG_04136-t26_3-p1
CAZy Family CBM47
CAZyme Description hypothetical protein, variant 2
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
260 29560.66 8.2417
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PparasiticaINRA-310 23240 761204 119 23121
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 2.4.1.-:5

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT7 52 229 4.9e-52 0.672

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
132999 b4GalT 4.69e-59 65 241 3 166
Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
397018 Glyco_transf_7C 2.02e-21 165 242 1 75
N-terminal domain of galactosyltransferase. This is the N-terminal domain of a family of galactosyltransferases from a wide range of Metazoa with three related galactosyltransferases activities, all three of which are possessed by one sequence in some cases. EC:2.4.1.90, N-acetyllactosamine synthase; EC:2.4.1.38, Beta-N-acetylglucosaminyl-glycopeptide beta-1,4- galactosyltransferase; and EC:2.4.1.22 Lactose synthase. Note that N-acetyllactosamine synthase is a component of Lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin EC:2.4.1.90 is the catalyzed reaction.
404599 Glyco_transf_7N 1.04e-19 64 159 47 132
N-terminal region of glycosyl transferase group 7. This is the N-terminal half of a family of galactosyltransferases from a wide range of Metazoa with three related galactosyltransferases activities, all three of which are possessed by one sequence in some cases. EC:2.4.1.90, N-acetyllactosamine synthase; EC:2.4.1.38, Beta-N-acetylglucosaminyl-glycopeptide beta-1,4- galactosyltransferase; and EC:2.4.1.22 Lactose synthase. Note that N-acetyllactosamine synthase is a component of Lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin EC:2.4.1.90 is the catalyzed reaction.
133042 GT2_Chondriotin_Pol_N 7.40e-06 184 220 128 164
N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm to undergo cytokinesis and cell division. Chondroitin is synthesized as proteoglycans, sulfated and secreted to the cell surface or extracellular matrix.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.81e-96 9 228 12 224
2.53e-32 66 241 149 318
3.57e-30 65 228 165 319
3.57e-30 65 228 165 319
4.34e-30 65 228 178 332

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.10e-30 65 228 65 219
Crystal structure of Lactose synthase complex with UDP [Bos taurus],1NHE_D Crystal structure of Lactose synthase complex with UDP [Bos taurus]
1.16e-30 65 228 52 206
Crystal structure of human wild type beta-1,4-galactosyltransferase-1 (B4GalT1) in apo-closed dimeric form [Homo sapiens],6FWU_B Crystal structure of human wild type beta-1,4-galactosyltransferase-1 (B4GalT1) in apo-closed dimeric form [Homo sapiens]
1.27e-30 65 228 56 210
Crystal structure of human wild type beta-1,4-galactosyltransferase-1 (B4GalT1) in apo-open monomeric form [Homo sapiens]
1.54e-30 65 228 65 219
Chain A, Beta-1,4-galactosyltransferase 1 [Bos taurus],1TVY_B Chain B, Beta-1,4-galactosyltransferase 1 [Bos taurus],1TW1_A Chain A, Beta-1,4-galactosyltransferase 1 [Bos taurus],1TW1_B Chain B, Beta-1,4-galactosyltransferase 1 [Bos taurus],1TW5_A Chain A, Beta-1,4-galactosyltransferase 1 [Bos taurus],1TW5_B Chain B, Beta-1,4-galactosyltransferase 1 [Bos taurus],2FYC_B Chain B, beta-1,4-galactosyltransferase [Bos taurus],2FYC_D Chain D, beta-1,4-galactosyltransferase [Bos taurus],4KRV_A Crystal structure of catalytic domain of bovine beta1,4-galactosyltransferase mutant M344H-GalT1 complex with 6-sulfo-GlcNAc [Bos taurus],4KRV_B Crystal structure of catalytic domain of bovine beta1,4-galactosyltransferase mutant M344H-GalT1 complex with 6-sulfo-GlcNAc [Bos taurus]
1.54e-30 65 228 65 219
Chain B, BETA-1,4-GALACTOSYLTRANSFERASE [Bos taurus],1NMM_D Chain D, BETA-1,4-GALACTOSYLTRANSFERASE [Bos taurus],1O0R_A Chain A, beta-1,4-galactosyltransferase [Bos taurus],1O0R_B Chain B, beta-1,4-galactosyltransferase [Bos taurus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.71e-31 65 228 178 332
Beta-1,4-galactosyltransferase 1 OS=Mus musculus OX=10090 GN=B4galt1 PE=1 SV=1
5.42e-29 65 228 177 331
Beta-1,4-galactosyltransferase 1 OS=Homo sapiens OX=9606 GN=B4GALT1 PE=1 SV=5
5.72e-29 65 228 181 335
Beta-1,4-galactosyltransferase 1 OS=Bos taurus OX=9913 GN=B4GALT1 PE=1 SV=3
2.41e-28 11 228 65 277
Beta-1,4-galactosyltransferase 4 OS=Mus musculus OX=10090 GN=B4galt4 PE=2 SV=1
9.04e-28 65 228 123 277
Beta-1,4-galactosyltransferase 4 OS=Cricetulus griseus OX=10029 GN=B4GALT4 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.997602 0.002428

TMHMM  Annotations      help

There is no transmembrane helices in PPTG_04136-t26_3-p1.