logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PPTG_03141-t26_1-p1

You are here: Home > Sequence: PPTG_03141-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora parasitica
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
CAZyme ID PPTG_03141-t26_1-p1
CAZy Family AA2|AA2
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
277 28801.35 5.7034
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PparasiticaINRA-310 23240 761204 119 23121
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PPTG_03141-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA16 28 195 7.5e-20 0.9820359281437125

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
397269 LPMO_10 6.80e-04 28 197 1 186
Lytic polysaccharide mono-oxygenase, cellulose-degrading. This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.87e-12 16 203 6 190
6.99e-11 15 226 7 218
3.46e-10 15 218 7 204
6.18e-10 16 203 8 194
6.48e-10 25 207 13 192

PDB Hits      help

PPTG_03141-t26_1-p1 has no PDB hit.

Swiss-Prot Hits      help

PPTG_03141-t26_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000482 0.999467 CS pos: 27-28. Pr: 0.9701

TMHMM  Annotations      download full data without filtering help

Start End
7 29