CAZyme Information: PPTG_01068-t26_1-p1

Basic Information

• Species: Phytophthora parasitica
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora parasitica
• CAZyme ID: PPTG_01068-t26_1-p1
• CAZy Family: AA17
• CAZyme Description: choline dehydrogenase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
577	KI669561|CGC7	63766.07	7.4846

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PparasiticaINRA-310	23240	761204	119	23121

• Gene Location: location=KI669561:4042636-4044369(-)

Full Sequence      

MIRHVIHRSASSLRTTQEFDYVIVGGGSAGCVLANRLSADASNSVLLVETGPKDRGLFDS
IRLAMPAMLTANLIDDRYNWNYVTEPQQHLNGRRLTWPRGRVLGGSSSINAMIYNRGHAL
DYDDWQQAGADGWSYADCLPYFKKAQTHSLGADEYRGGDGPLNVTRRLQRDQPLYQVFLD
AAMQAGYPFTDDVNGYQQEGVGWLDHTIHNGQRCSASAAYLTDSVLARENLSVVTDTFVN
KVVFEGKKAVGIETEPIKADGNPPTQIRAKEVILSSGAINSPQLLMLSGVGDAEHLKKVG
TPLVHHLPAVGQNMEEHLGVYLHVACKKPVTLYHATPHFPHKMVWMGIQWLVSKTGMGTS
SHIEVGGFFRSAPGKRHPDLKWQFLPGASDENRQLLRDGHAMMLHCTPLRATSRGYIKLR
SANPRDSPVIQPNYLATETDRVDMRNGVRLTREVLKQRAFDEYRGEAISPTDEVQSDAEI
DAWIRQYASTDYHPSSTNRMGKEADKGTVVDAQTRVHGLEGLRVVDASIMPNNVSGNLNA
PTIMLAEKAADIILGKPPLPKLDAPVYAAKNWETSQR

Enzyme Prediction     

No EC number prediction in PPTG_01068-t26_1-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA3	17	554	4e-165	0.9947183098591549

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
235000	PRK02106	0.0	15	577	2	555	choline dehydrogenase; Validated
225186	BetA	3.68e-174	18	559	7	539	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
366272	GMC_oxred_N	1.61e-56	91	318	15	217	GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
398739	GMC_oxred_C	3.57e-44	412	549	2	143	GMC oxidoreductase. This domain found associated with pfam00732.
215420	PLN02785	1.44e-29	9	545	46	568	Protein HOTHEAD

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ28087.1|AA3_2	6.70e-275	3	577	14	581
ANI26486.1|AA3_2	1.61e-205	9	576	61	624
CAB3230510.1|AA3_2	1.09e-204	2	576	7	578
AWP09430.1|AA3_2	4.27e-203	16	567	17	564
CEF60566.1|AA3_2	1.30e-166	21	567	35	581

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5NCC_A	2.94e-90	2	556	8	579	Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis]
6YS1_AAA	1.50e-89	17	556	6	563	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
6YRU_AAA	1.50e-89	17	556	6	563	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6ZH7_A	1.50e-89	17	556	6	563	Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
7AV4_AAA	1.78e-89	2	556	68	639	Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q8NE62|CHDH_HUMAN	2.57e-212	9	576	31	594	Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
sp|Q8BJ64|CHDH_MOUSE	1.57e-211	18	576	42	596	Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
sp|Q6UPE0|CHDH_RAT	4.97e-211	18	576	45	599	Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
sp|Q8D3K2|BETA_VIBVU	7.24e-178	17	577	3	554	Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=betA PE=3 SV=1
sp|Q7MF12|BETA_VIBVY	8.27e-177	17	577	3	554	Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=betA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000012	0.000012

TMHMM  Annotations     

There is no transmembrane helices in PPTG_01068-t26_1-p1.