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CAZyme Information: PMAA_101960-t26_1-p1

You are here: Home > Sequence: PMAA_101960-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Talaromyces marneffei
Lineage Ascomycota; Eurotiomycetes; ; Trichocomaceae; Talaromyces; Talaromyces marneffei
CAZyme ID PMAA_101960-t26_1-p1
CAZy Family GT4
CAZyme Description conserved hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
244 DS995902|CGC15 26495.49 5.9053
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_TmarneffeiATCC18224 10194 441960 145 10049
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PMAA_101960-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL7 31 243 2.7e-57 0.985981308411215

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
400923 Alginate_lyase2 7.15e-37 31 243 3 222
Alginate lyase. Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This family forms an all beta fold and is different to all alpha fold of pfam05426.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.30e-180 1 244 1 244
4.28e-96 19 243 29 252
1.86e-63 11 243 12 248
3.60e-62 21 243 24 254
9.98e-61 11 243 12 249

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.05e-59 21 243 6 231
Chain A, Glucuronan lyase [Trichoderma parareesei]

Swiss-Prot Hits      help

PMAA_101960-t26_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000214 0.999780 CS pos: 20-21. Pr: 0.9601

TMHMM  Annotations      download full data without filtering help

Start End
5 27