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CAZyme Information: PMAA_097490-t26_1-p1

You are here: Home > Sequence: PMAA_097490-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Talaromyces marneffei
Lineage Ascomycota; Eurotiomycetes; ; Trichocomaceae; Talaromyces; Talaromyces marneffei
CAZyme ID PMAA_097490-t26_1-p1
CAZy Family GT2|GT2
CAZyme Description extracellular polygalacturonase, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
375 37848.89 6.3222
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_TmarneffeiATCC18224 10194 441960 145 10049
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:80

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 52 370 1.4e-76 0.9753846153846154

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 1.08e-145 56 375 1 321
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
177865 PLN02218 1.05e-28 53 368 92 417
polygalacturonase ADPG
215540 PLN03010 1.26e-25 94 374 122 394
polygalacturonase
178580 PLN03003 2.53e-25 108 307 115 304
Probable polygalacturonase At3g15720
227721 Pgu1 2.58e-24 22 302 69 408
Polygalacturonase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
4.48e-240 1 375 1 375
3.00e-166 5 375 7 376
3.00e-166 5 375 7 376
9.51e-166 10 375 7 369
1.66e-165 28 375 23 365

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.72e-167 28 375 2 344
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
2.72e-167 28 375 2 344
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
5.53e-165 37 375 2 336
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
4.65e-155 37 373 2 335
Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini]
1.68e-150 35 375 1 339
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.34e-167 5 375 7 376
Polygalacturonase OS=Penicillium griseoroseum OX=84562 GN=PGG1 PE=3 SV=1
5.17e-161 12 375 13 380
Polygalacturonase 2 OS=Penicillium olsonii OX=99116 GN=PG2 PE=3 SV=1
1.14e-157 17 375 18 380
Endo-polygalacturonase OS=Sclerotinia sclerotiorum OX=5180 GN=PG1 PE=3 SV=1
4.67e-154 7 375 8 378
Endopolygalacturonase I OS=Aspergillus aculeatus OX=5053 GN=pgaI PE=1 SV=1
3.44e-152 14 375 15 371
Polygalacturonase OS=Penicillium janthinellum OX=5079 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000215 0.999737 CS pos: 34-35. Pr: 0.3631

TMHMM  Annotations      help

There is no transmembrane helices in PMAA_097490-t26_1-p1.