CAZyme Information: PMAA_096580-t26_1-p1

Basic Information

• Species: Talaromyces marneffei
• Lineage: Ascomycota; Eurotiomycetes; ; Trichocomaceae; Talaromyces; Talaromyces marneffei
• CAZyme ID: PMAA_096580-t26_1-p1
• CAZy Family: GT22
• CAZyme Description: extracellular rhamnogalacturonase, putative

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
573	DS995902|CGC1	59959.94	4.5655

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_TmarneffeiATCC18224	10194	441960	145	10049

• Gene Location: location=DS995902:1722374-1724270(+)

Full Sequence      

MYWSLLTLPLLAAIPISNAQLTGRVGPLTTVTEKAAIKTCNVLDYGAVADLSTDLGVPLV
SAFKDCIHGGLVYIPEGRYAMSTWATLDKGTGWALQLDGIIYRNGTDGGNMILIEHASDF
EMFSSNSAGAMQGLGYEFHADKKSTTTRLVRLQKVDSFSVHDIILVDSPAFHLVLDTVQD
GEVYNVAIRGGNEGGLDGIDVTGSNIWVHDVEVTNKDECVTVKSPSSNILVESVYCNWSG
GCAMGSLGADTNISDITYRNIYTWSSNQMYMIKSNGGSGTVQNILLANFIGHGNAYSLDI
DTSWAQMSKASGDGVGYSNITITNWKGTESNGLQRGPIKVLCPAGNPCYDLTIENFAMWT
ESGDSQTYTCDNAYGKGFCLASGHDYVAYTGTPTTVTVAPSGYSATTMTADLKSAFGTKS
SIPIPTIPTTFFPGVTPYRALASASHAAAASSASSARDAGLAVSSLVGTHTATSGATSVA
STATSYPSRSPVSLVATSATSAVSAILSPSPESSSTSPATVGIISSISIPSVVSYTSFST
SVVSSTQSSPQKAFLTPIPEPEDSERCPSDFDL

Enzyme Prediction     

EC	3.2.1.171:11

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH28	63	374	1.5e-49	0.9661538461538461

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
215540	PLN03010	3.13e-16	41	376	48	392	polygalacturonase
395231	Glyco_hydro_28	1.35e-15	145	379	83	321	Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
177865	PLN02218	5.09e-10	182	373	227	418	polygalacturonase ADPG
215120	PLN02188	6.48e-10	30	376	27	393	polygalacturonase/glycoside hydrolase family protein
165802	PLN02155	4.32e-09	41	376	29	381	polygalacturonase

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QGA19199.1|GH28	0.0	1	573	1	573
AMH93608.1|GH28	3.75e-302	1	467	1	469
BCS11707.1|GH28	7.77e-227	8	480	9	470
BCR99404.1|GH28	7.77e-227	8	480	9	470
CAK48512.1|GH28	1.32e-224	8	450	9	452

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1RMG_A	9.27e-209	20	442	1	421	Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]
4C2L_A	1.98e-15	50	383	26	385	Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q0CFC7|RHGB_ASPTN	2.64e-226	4	450	5	451	Probable rhamnogalacturonase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rhgB PE=3 SV=1
sp|A2R3G4|RHGB_ASPNC	2.34e-225	8	450	9	452	Probable rhamnogalacturonase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rhgB PE=3 SV=1
sp|P87161|RHGB_ASPNG	9.47e-225	8	450	9	452	Rhamnogalacturonase B OS=Aspergillus niger OX=5061 GN=rhgB PE=1 SV=1
sp|Q2TWN8|RHGB_ASPOR	2.19e-219	10	441	11	445	Probable rhamnogalacturonase B OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rhgB PE=3 SV=1
sp|B0Y0Q3|RHGB_ASPFC	2.80e-217	8	443	9	445	Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=rhgB PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000204	0.999784	CS pos: 19-20. Pr: 0.9647

TMHMM  Annotations     

There is no transmembrane helices in PMAA_096580-t26_1-p1.