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CAZyme Information: PMAA_050670-t26_1-p1

You are here: Home > Sequence: PMAA_050670-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Talaromyces marneffei
Lineage Ascomycota; Eurotiomycetes; ; Trichocomaceae; Talaromyces; Talaromyces marneffei
CAZyme ID PMAA_050670-t26_1-p1
CAZy Family GH18
CAZyme Description rhamnogalacturonase A precursor, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
447 DS995903|CGC4 47811.72 5.7111
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_TmarneffeiATCC18224 10194 441960 145 10049
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.171:11

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 72 375 9.5e-47 0.9446153846153846

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
215540 PLN03010 6.30e-16 44 377 48 391
polygalacturonase
178580 PLN03003 3.63e-15 44 377 25 377
Probable polygalacturonase At3g15720
395231 Glyco_hydro_28 6.76e-14 143 375 79 315
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215120 PLN02188 2.71e-12 36 375 30 390
polygalacturonase/glycoside hydrolase family protein
177865 PLN02218 6.93e-11 45 296 70 344
polygalacturonase ADPG

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 447 1 447
1.01e-275 1 445 1 437
1.77e-215 2 445 4 446
1.29e-210 1 445 3 446
1.29e-210 1 445 3 446

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.10e-194 28 439 6 416
Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]
2.87e-14 39 374 15 373
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.34e-194 11 439 11 434
Rhamnogalacturonase A OS=Aspergillus aculeatus OX=5053 GN=rhgA PE=1 SV=1
1.57e-187 28 439 27 439
Probable rhamnogalacturonase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rhgB PE=3 SV=1
3.05e-186 28 439 27 439
Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=rhgB PE=3 SV=1
6.13e-186 28 439 27 439
Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=rhgB PE=3 SV=1
2.93e-184 14 439 17 441
Probable rhamnogalacturonase B OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rhgB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000246 0.999721 CS pos: 23-24. Pr: 0.8408

TMHMM  Annotations      help

There is no transmembrane helices in PMAA_050670-t26_1-p1.