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CAZyme Information: PIW_T012305-RA-p1

You are here: Home > Sequence: PIW_T012305-RA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Globisporangium iwayamae
Lineage Oomycota; NA; ; Pythiaceae; Globisporangium; Globisporangium iwayamae
CAZyme ID PIW_T012305-RA-p1
CAZy Family GT41
CAZyme Description Exo-1,3-beta-glucanase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
678 75302.72 4.7662
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_GiwayamaeDAOMBR242034 14874 1223558 0 14874
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PIW_T012305-RA-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH5 379 657 2.7e-44 0.9711191335740073

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
396255 Amino_oxidase 1.94e-47 89 330 196 435
Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
177909 PLN02268 3.49e-39 55 347 160 434
probable polyamine oxidase
215187 PLN02328 1.58e-38 86 340 420 674
lysine-specific histone demethylase 1 homolog
178578 PLN03000 4.34e-34 86 340 364 618
amine oxidase
215527 PLN02976 1.08e-30 82 318 919 1160
amine oxidase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
8.86e-179 339 677 5 369
1.64e-177 353 677 37 361
4.20e-125 351 676 46 372
2.01e-108 351 676 136 452
2.56e-94 353 677 66 387

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.20e-24 55 318 490 751
Crystal structure of LSD2 with H3 [Homo sapiens],4GU0_B Crystal structure of LSD2 with H3 [Homo sapiens],4GU0_C Crystal structure of LSD2 with H3 [Homo sapiens],4GU0_D Crystal structure of LSD2 with H3 [Homo sapiens],4GUR_A Crystal structure of LSD2-NPAC with H3 in space group P21 [Homo sapiens],4GUS_A Crystal structure of LSD2-NPAC with H3 in space group P3221 [Homo sapiens],4GUT_A Crystal structure of LSD2-NPAC [Homo sapiens],4GUU_A Crystal structure of LSD2-NPAC with tranylcypromine [Homo sapiens],4HSU_A Crystal structure of LSD2-NPAC with H3(1-26)in space group P21 [Homo sapiens],6R1U_K Structure of LSD2/NPAC-linker/nucleosome core particle complex: Class 2 [Homo sapiens],6R25_K Structure of LSD2/NPAC-linker/nucleosome core particle complex: Class 3 [Homo sapiens]
5.27e-24 55 318 498 759
Crystal structure of LSD2 [Homo sapiens],4GU1_B Crystal structure of LSD2 [Homo sapiens]
5.37e-24 55 318 510 771
Native structure of LSD2 /AOF1/KDM1b in spacegroup of C2221 at 2.13A [Homo sapiens],4FWF_A Complex structure of LSD2/AOF1/KDM1b with H3K4 mimic [Homo sapiens],4FWJ_A Native structure of LSD2/AOF1/KDM1b in spacegroup of I222 at 2.9A [Homo sapiens],4FWJ_B Native structure of LSD2/AOF1/KDM1b in spacegroup of I222 at 2.9A [Homo sapiens]
6.11e-21 89 330 391 644
Chain A, Lysine-specific histone demethylase 1 [Homo sapiens]
1.85e-20 89 330 390 643
Crystal structure of Human LSD1 [Homo sapiens],6NQU_A Human LSD1 in complex with GSK2879552 [Homo sapiens],6NR5_A Human LSD1 in complex with Phenelzine sulfate [Homo sapiens]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.32e-31 27 340 399 702
Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=LDL1 PE=1 SV=1
5.62e-30 39 355 414 725
Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0755200 PE=2 SV=1
8.94e-29 86 352 377 644
Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. indica OX=39946 GN=B0103C08-B0602B01.13 PE=3 SV=1
1.19e-28 82 352 381 644
Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0560300 PE=2 SV=2
3.17e-27 55 357 183 467
Polyamine oxidase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=PAO4 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000080 0.000002

TMHMM  Annotations      help

There is no transmembrane helices in PIW_T012305-RA-p1.