CAZyme Information: PIW_T004336-RA-p1

Basic Information

• Species: Globisporangium iwayamae
• Lineage: Oomycota; NA; ; Pythiaceae; Globisporangium; Globisporangium iwayamae
• CAZyme ID: PIW_T004336-RA-p1
• CAZy Family: GH16
• CAZyme Description: Polysaccharide lyase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
252	PiwaDAOMBR242034_SC00521|CGC1	27077.60	8.2628

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_GiwayamaeDAOMBR242034	14874	1223558	0	14874

• Gene Location: location=PiwaDAOMBR242034_SC00521:11560-12684(+)

Full Sequence      

MKTYERSNVQCTEQHEDGPATAVFHVEAGATLKNYSEPYVVKAGATFDGGMKTYERSNVQ
CTEQNEGGTSTAVFLVEAGATLKNVIIGKNQAEGVHCEQSGCTIQNVWWDDVCEDALSIK
GGSASSVSKDFGKLYRSCGSCKNQVQRKVTVANVYAVNPKVGIVTDFGKLYRSCGNCKSQ
VQRKVTVANVYAVNPKVGIVTVNKNLGDEAKLSNIKVKTSRDVEKVEVCAWSQAVTSGEP
KKLGHGPSPPLC

Enzyme Prediction     

EC	4.2.2.2:4

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL3	36	128	5.9e-40	0.4690721649484536

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
397360	Pectate_lyase	4.40e-68	35	223	13	189	Pectate lyase.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ADN18837.1|PL3_2	3.44e-58	1	252	61	251
ADN18840.1|PL3_2	7.92e-54	1	252	61	251
ADN18841.1|PL3_2	1.28e-48	1	252	51	243
ADN18839.1|PL3_2	9.90e-33	1	252	53	266
AHX74070.1|PL3_2	9.90e-33	1	252	53	266

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3B90_A	6.31e-10	92	246	54	208	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B90_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
3B4N_A	1.34e-09	92	246	172	326	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B4N_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_A Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
4U49_A	1.56e-07	89	246	172	329	Chain A, Pectate lyase [Pectobacterium carotovorum],4U49_B Chain B, Pectate lyase [Pectobacterium carotovorum],4U4B_A Chain A, Pectate lyase [Pectobacterium carotovorum]
1EE6_A	4.74e-06	85	137	55	104	Crystal Structure Of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. [Bacillus sp. KSM-P15]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q5ATC7|PLYH_EMENI	1.35e-22	1	163	64	204	Pectate lyase H OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyH PE=1 SV=1
sp|Q5B7Z3|PLYE_EMENI	4.61e-21	1	163	59	200	Pectate lyase E OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyE PE=1 SV=1
sp|A1C4B8|PLYE_ASPCL	1.24e-20	1	163	59	200	Probable pectate lyase E OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=plyE PE=3 SV=1
sp|B0YB89|PLYD_ASPFC	1.38e-20	2	248	48	230	Probable pectate lyase D OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyD PE=3 SV=1
sp|Q4WGV9|PLYD_ASPFU	1.38e-20	2	248	48	230	Probable pectate lyase D OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyD PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000033	0.000000

TMHMM  Annotations     

There is no transmembrane helices in PIW_T004336-RA-p1.