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CAZyme Information: PITG_22758-t26_1-p1

You are here: Home > Sequence: PITG_22758-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora infestans
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
CAZyme ID PITG_22758-t26_1-p1
CAZy Family PL3|PL3
CAZyme Description arabinofuranosidase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
353 36768.56 4.3910
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PinfestansT30-4 19344 403677 1547 17797
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.55:24 3.2.1.37:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH54 20 328 1.6e-136 0.990506329113924

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
401229 ArabFuran-catal 0.0 20 328 1 315
Alpha-L-arabinofuranosidase B, catalytic. Members of this family, which are present in fungal alpha-L-arabinofuranosidase B, adopt a beta-sandwich fold similar to that of Concanavalin A-like lectins/glucanase. The beta-sandwich fold consists of two anti-parallel beta-sheets with seven and and six strands, respectively. In addition, there are four helices outside of the beta-strands. The beta-sandwich strands are closely packed and curved with a jelly roll topology, creating a small catalytic pocket. The domain catalyzes the hydrolysis of alpha-1,2-, alpha-1,3- and alpha-1,5-L-arabinofuranosidic bonds in L-arabinose-containing hemicelluloses such as arabinoxylan and L-arabinan.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.68e-166 1 328 1 328
3.98e-140 14 338 35 361
6.65e-139 14 338 36 362
1.15e-137 6 327 70 393
3.62e-137 14 327 16 331

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.83e-125 19 327 2 316
Crystal structure of arabinofuranosidase [Aspergillus luchuensis],1WD4_A Crystal structure of arabinofuranosidase complexed with arabinose [Aspergillus luchuensis],6SXS_AAA Chain AAA, Alpha-L-arabinofuranosidase B [Aspergillus luchuensis]
3.96e-125 19 327 3 317
GH54 a-l-arabinofuranosidase soaked with aziridine inhibitor [Aspergillus luchuensis IFO 4308]
1.09e-124 19 327 2 316
E221Q mutant of GH54 a-l-arabinofuranosidase soaked with 4-nitrophenyl a-l-arabinofuranoside [Aspergillus luchuensis IFO 4308]
3.09e-124 19 327 2 316
Chain A, alpha-L-arabinofuranosidase B [Aspergillus luchuensis],2D44_A Chain A, alpha-L-arabinofuranosidase B [Aspergillus luchuensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.10e-127 7 327 7 333
Probable alpha-L-arabinofuranosidase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=abfB PE=3 SV=1
9.10e-127 7 327 7 333
Alpha-L-arabinofuranosidase B OS=Aspergillus niger OX=5061 GN=abfB PE=1 SV=1
2.58e-126 7 327 7 333
Alpha-L-arabinofuranosidase B OS=Aspergillus kawachii (strain NBRC 4308) OX=1033177 GN=abfB PE=1 SV=1
3.66e-125 18 327 26 341
Probable alpha-L-arabinofuranosidase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=abfB PE=3 SV=1
5.18e-125 18 327 26 341
Probable alpha-L-arabinofuranosidase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=abfB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000208 0.999777 CS pos: 18-19. Pr: 0.9791

TMHMM  Annotations      help

There is no transmembrane helices in PITG_22758-t26_1-p1.