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CAZyme Information: PITG_21925-t26_1-p1

You are here: Home > Sequence: PITG_21925-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora infestans
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
CAZyme ID PITG_21925-t26_1-p1
CAZy Family PL3
CAZyme Description polygalacturonase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
260 26987.28 7.9410
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PinfestansT30-4 19344 403677 1547 17797
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:10

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 44 260 6.1e-41 0.6646153846153846

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 1.29e-50 43 260 89 321
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
227721 Pgu1 5.48e-17 50 235 249 431
Polygalacturonase [Carbohydrate transport and metabolism].
215426 PLN02793 2.18e-16 58 188 186 322
Probable polygalacturonase
177865 PLN02218 1.99e-13 49 188 202 337
polygalacturonase ADPG
215540 PLN03010 2.61e-13 51 260 169 386
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.68e-131 43 260 130 362
2.07e-122 43 260 34 266
1.92e-121 43 260 130 362
7.24e-109 43 260 129 361
7.24e-109 43 260 129 361

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.13e-38 28 260 97 339
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]
1.28e-37 49 260 118 344
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
1.28e-37 49 260 118 344
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
3.16e-36 49 260 110 336
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
3.36e-36 49 256 110 333
Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.11e-42 28 260 121 363
Probable endopolygalacturonase A OS=Aspergillus parasiticus OX=5067 GN=pgaA PE=2 SV=1
1.98e-41 28 260 121 363
Endopolygalacturonase A OS=Aspergillus flavus (strain ATCC MYA-384 / AF70) OX=1392242 GN=pgaA PE=2 SV=1
2.72e-41 45 260 131 360
Probable endopolygalacturonase B OS=Aspergillus kawachii OX=1069201 GN=pgaB PE=3 SV=1
5.47e-41 28 260 121 363
Probable endopolygalacturonase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgaB PE=3 SV=1
7.51e-41 45 260 131 360
Endopolygalacturonase B OS=Aspergillus niger OX=5061 GN=pgaB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.999763 0.000265

TMHMM  Annotations      help

There is no transmembrane helices in PITG_21925-t26_1-p1.