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CAZyme Information: PITG_21499-t26_1-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytophthora infestans | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans | |||||||||||
| CAZyme ID | PITG_21499-t26_1-p1 | |||||||||||
| CAZy Family | PL3 | |||||||||||
| CAZyme Description | pectin lyase, putative | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.10:1 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 126 | 237 | 8.1e-44 | 0.5721925133689839 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 1.62e-26 | 126 | 234 | 1 | 113 | Amb_all domain. |
| 226384 | PelB | 1.82e-10 | 124 | 232 | 84 | 195 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 1.76e-06 | 130 | 238 | 23 | 140 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 8.55e-143 | 6 | 237 | 6 | 237 | |
| 1.19e-108 | 15 | 237 | 9 | 240 | |
| 4.02e-107 | 30 | 237 | 190 | 397 | |
| 3.09e-96 | 33 | 237 | 22 | 235 | |
| 4.80e-76 | 14 | 237 | 7 | 237 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2.59e-54 | 30 | 234 | 1 | 198 | Pectin Lyase B [Aspergillus niger] |
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| 1.63e-44 | 32 | 236 | 3 | 200 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
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| 6.36e-44 | 32 | 236 | 3 | 200 | Pectin Lyase A [Aspergillus niger] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7.79e-61 | 6 | 237 | 2 | 222 | Pectin lyase OS=Colletotrichum gloeosporioides OX=474922 GN=PNLA PE=3 SV=1 |
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| 6.53e-59 | 29 | 237 | 20 | 221 | Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1 |
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| 3.55e-57 | 28 | 237 | 20 | 223 | Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1 |
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| 3.55e-57 | 28 | 237 | 20 | 223 | Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1 |
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| 1.51e-55 | 32 | 237 | 18 | 216 | Probable pectin lyase E OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelE PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000422 | 0.999551 | CS pos: 28-29. Pr: 0.9682 |
