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CAZyme Information: PITG_20992-t26_1-p1

You are here: Home > Sequence: PITG_20992-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora infestans
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
CAZyme ID PITG_20992-t26_1-p1
CAZy Family PL1|PL1
CAZyme Description polysaccharide lyase, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
121 13667.90 8.9869
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PinfestansT30-4 19344 403677 1547 17797
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 2 120 3.9e-33 0.6149732620320856

CDD Domains      help

PITG_20992-t26_1-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
9.64e-44 3 121 167 291
9.64e-44 3 121 167 291
2.01e-36 3 121 167 291
2.01e-36 3 121 167 291
1.08e-35 3 118 167 284

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.08e-14 3 121 139 252
Pectin Lyase A [Aspergillus niger]
3.08e-14 3 119 139 251
Pectin Lyase B [Aspergillus niger]
5.80e-14 3 121 139 252
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.52e-23 3 121 161 274
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
1.52e-23 3 121 161 274
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
2.35e-21 3 121 155 268
Probable pectin lyase F OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelF PE=3 SV=1
2.47e-21 3 121 159 272
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
1.89e-20 3 108 160 261
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000032 0.000017

TMHMM  Annotations      help

There is no transmembrane helices in PITG_20992-t26_1-p1.