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CAZyme Information: PITG_19909-t26_1-p1

You are here: Home > Sequence: PITG_19909-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora infestans
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
CAZyme ID PITG_19909-t26_1-p1
CAZy Family GT90
CAZyme Description polysaccharide lyase, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
124 DS028264|CGC1 13936.22 9.0251
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PinfestansT30-4 19344 403677 1547 17797
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 2 124 1.5e-34 0.6203208556149733

CDD Domains      help

PITG_19909-t26_1-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.73e-46 3 124 167 291
1.73e-46 3 124 167 291
3.44e-40 3 124 167 291
1.87e-39 3 124 167 291
2.63e-39 3 124 167 291

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.42e-15 3 124 139 256
Pectin Lyase B [Aspergillus niger]
3.40e-14 3 124 139 252
Pectin Lyase A [Aspergillus niger]
6.40e-14 3 124 139 252
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.05e-23 3 124 161 274
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
6.05e-23 3 124 161 274
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
1.46e-21 3 124 159 272
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
4.93e-21 3 124 155 268
Probable pectin lyase F OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelF PE=3 SV=1
2.10e-20 3 108 160 261
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000057 0.000006

TMHMM  Annotations      help

There is no transmembrane helices in PITG_19909-t26_1-p1.