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CAZyme Information: PITG_19637-t26_1-p1

You are here: Home > Sequence: PITG_19637-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora infestans
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
CAZyme ID PITG_19637-t26_1-p1
CAZy Family GT71
CAZyme Description polygalacturonase, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
253 26566.60 9.4051
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PinfestansT30-4 19344 403677 1547 17797
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:10

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 27 184 9.6e-41 0.4461538461538462

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 3.07e-45 35 241 83 308
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
227721 Pgu1 4.34e-18 16 222 211 425
Polygalacturonase [Carbohydrate transport and metabolism].
215426 PLN02793 6.93e-16 64 184 204 320
Probable polygalacturonase
177865 PLN02218 1.92e-15 37 184 192 335
polygalacturonase ADPG
178580 PLN03003 1.33e-13 35 179 136 276
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.14e-131 27 253 134 380
1.20e-129 27 253 134 380
3.27e-127 27 253 145 391
3.27e-127 27 253 145 391
3.79e-127 27 253 139 385

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.71e-34 15 237 83 327
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
1.71e-34 15 237 83 327
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
3.17e-33 26 237 86 320
Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini]
4.19e-33 15 237 75 319
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
7.70e-32 39 233 105 328
Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.45e-37 35 242 144 373
Endo-polygalacturonase OS=Sclerotinia sclerotiorum OX=5180 GN=PG1 PE=3 SV=1
2.04e-36 15 241 118 365
Probable endopolygalacturonase E OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pgaE PE=3 SV=1
2.19e-36 35 237 125 347
Polygalacturonase OS=Cochliobolus carbonum OX=5017 GN=PGN1 PE=3 SV=1
5.58e-36 15 241 118 365
Endopolygalacturonase E OS=Aspergillus niger OX=5061 GN=pgaE PE=1 SV=1
8.24e-36 35 241 126 350
Probable endopolygalacturonase A OS=Aspergillus parasiticus OX=5067 GN=pgaA PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.999995 0.000031

TMHMM  Annotations      help

There is no transmembrane helices in PITG_19637-t26_1-p1.