CAZyme Information: PITG_18951-t26_1-p1

Basic Information

• Species: Phytophthora infestans
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
• CAZyme ID: PITG_18951-t26_1-p1
• CAZy Family: GT71
• CAZyme Description: carbohydrate-binding protein, putative

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
781		82855.74	8.1598

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PinfestansT30-4	19344	403677	1547	17797

• Gene Location: location=DS028209:450053-452398(-)

Full Sequence      

MRLPSLRCLASALLVFNSIVDAQTYDAIVVGSGPGGLVAAEYLSRDSSVSVLILEAGPRS
LAATGGTDSPDYAQGRGLTKFDIPGEYDSVIYNGANEQYRVEWISDAYMWLGKLVGGCSS
INAALYFRPPDSYITNTQWPFSAAQMVSKMNENEQIHGHTDRPSSDGIWYTQEGYSIVSR
ALLARGYAERTINDAAARNSKSKTFGHAPFTFKNGKRDTPANAFWGRMSSRSNVRLLTGA
KVDYILRASGGKATGVVYNGGTQALLSSRGTVLMAAGALSTTKVLIQSGIGPSSQLNVLN
GRNGFPGVSQAAGWVTNANVGRNLFDTNVVFASFSHPQMSSFLYKNKPSWAINQYMNQGF
TGPWSSPGPTLISYENYDVQGRTYEFQSTALTNGFGEFYGRSNAFTLALYINNPESRAAS
GFDGNTNWRAFNEGTPYYGTSRDLAALQSYAQRTVSAMVAQGATFLSAGSDDISVANWVA
ANRGLITHHFGGSCYASSNSGDTRRCADERLRVLGMSNVFVADASAMRDGTVNPYGFIMY
IGREAADQAKTFITANTGTGGTCSTAENNVDYIGNDLTSRTSSTASGCCSICSTTSGCNA
YSWTNYNGGTCWLKSARGTTQSKSGVISATLNGGPTSSCTTIEENVDYTGNDVGNALSGS
AEGCCAICRARNDCKAYTWTDHNTGTCWLKSGKGAFTTKTGARSARVSSTSPTCTLVNNV
DYNGNDIGNSPSAAATGCCDICRGRTGCRVFTWSNYNGGTCWLKSQQGPGTTVAGAVSGT
I

Enzyme Prediction     

EC	1.1.99.18:3

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA3	17	547	3.6e-108	0.9726277372262774

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
225186	BetA	2.36e-36	22	550	5	534	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000	PRK02106	7.62e-17	23	326	4	298	choline dehydrogenase; Validated
238533	APPLE_Factor_XI_like	1.06e-14	637	705	3	70	Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
366272	GMC_oxred_N	8.06e-13	107	326	19	215	GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
238533	APPLE_Factor_XI_like	1.51e-11	711	779	2	70	Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ20744.1|AA3_1	9.80e-276	8	632	11	638
AIG55859.1|AA3_1	1.15e-222	15	781	14	811
AIG55821.1|AA3_1	9.34e-210	12	778	11	807
AIG55589.1|AA3_1	1.07e-151	12	531	9	526
AIG55820.1|AA3_1	8.16e-140	8	544	7	544

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1KDG_A	1.15e-49	20	558	3	544	Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
1NAA_A	1.27e-48	25	558	3	539	Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
4QI4_A	1.92e-38	24	548	7	541	Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
4QI6_A	9.44e-38	24	548	229	763	Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
4QI7_A	2.05e-34	24	546	229	760	Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q01738|CDH_PHACH	1.12e-47	20	558	230	771	Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
sp|Q988C9|4PADH_RHILO	5.72e-17	22	547	4	531	4-pyridoxate dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=padh1 PE=1 SV=1
sp|Q8D3K2|BETA_VIBVU	1.74e-15	23	525	3	505	Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=betA PE=3 SV=1
sp|Q7MF12|BETA_VIBVY	7.05e-15	23	525	3	505	Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=betA PE=3 SV=1
sp|M5EAX2|GMCH_MALS4	2.24e-13	20	299	42	343	GMC oxidoreductase family protein Mala s 12 OS=Malassezia sympodialis (strain ATCC 42132) OX=1230383 GN=MSY001_2108 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000680	0.999269	CS pos: 22-23. Pr: 0.9726

TMHMM  Annotations     

There is no transmembrane helices in PITG_18951-t26_1-p1.