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CAZyme Information: PITG_16822-t26_1-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytophthora infestans | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans | |||||||||||
| CAZyme ID | PITG_16822-t26_1-p1 | |||||||||||
| CAZy Family | GT20 | |||||||||||
| CAZyme Description | polygalacturonase, putative | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.15:10 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 50 | 334 | 1.6e-63 | 0.8369230769230769 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 395231 | Glyco_hydro_28 | 2.83e-60 | 42 | 334 | 20 | 321 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 215426 | PLN02793 | 1.81e-25 | 49 | 294 | 112 | 368 | Probable polygalacturonase |
| 215540 | PLN03010 | 1.41e-24 | 71 | 333 | 139 | 390 | polygalacturonase |
| 227721 | Pgu1 | 2.05e-22 | 36 | 261 | 163 | 404 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| 177865 | PLN02218 | 2.92e-21 | 65 | 303 | 150 | 391 | polygalacturonase ADPG |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 2.21e-196 | 1 | 334 | 1 | 361 | |
| 3.14e-196 | 1 | 334 | 1 | 361 | |
| 2.57e-195 | 1 | 334 | 1 | 361 | |
| 1.05e-194 | 1 | 334 | 1 | 361 | |
| 4.73e-184 | 1 | 334 | 1 | 361 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.45e-55 | 27 | 334 | 6 | 344 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 1.45e-55 | 27 | 334 | 6 | 344 | Chain A, endo-polygalacturonase [Evansstolkia leycettana] |
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| 1.41e-53 | 31 | 334 | 2 | 336 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 8.38e-53 | 29 | 334 | 1 | 339 | Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus] |
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| 4.27e-52 | 30 | 334 | 1 | 336 | Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_B Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_C Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_D Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_E Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_F Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6.63e-58 | 1 | 334 | 1 | 363 | Probable endopolygalacturonase A OS=Aspergillus parasiticus OX=5067 GN=pgaA PE=2 SV=1 |
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| 2.11e-57 | 27 | 334 | 30 | 368 | Probable endopolygalacturonase I OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pgaI PE=3 SV=1 |
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| 1.02e-56 | 1 | 334 | 1 | 363 | Probable endopolygalacturonase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgaB PE=3 SV=1 |
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| 1.58e-56 | 26 | 334 | 40 | 380 | Endo-polygalacturonase OS=Sclerotinia sclerotiorum OX=5180 GN=PG1 PE=3 SV=1 |
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| 7.94e-56 | 1 | 334 | 1 | 363 | Endopolygalacturonase A OS=Aspergillus flavus (strain ATCC MYA-384 / AF70) OX=1392242 GN=pgaA PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000201 | 0.999781 | CS pos: 25-26. Pr: 0.8826 |