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CAZyme Information: PITG_16169-t26_1-p1

You are here: Home > Sequence: PITG_16169-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora infestans
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
CAZyme ID PITG_16169-t26_1-p1
CAZy Family GT2
CAZyme Description carbohydrate-binding protein, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
340 36195.64 9.6226
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PinfestansT30-4 19344 403677 1547 17797
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 1.1.99.18:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 17 330 1.2e-78 0.5638686131386861

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225186 BetA 2.15e-27 22 326 5 302
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000 PRK02106 2.32e-18 23 326 4 298
choline dehydrogenase; Validated
366272 GMC_oxred_N 1.45e-15 107 326 19 215
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
215420 PLN02785 1.11e-10 16 300 47 310
Protein HOTHEAD
224154 COG1233 3.43e-06 23 59 2 37
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.84e-136 8 330 11 329
1.42e-100 12 327 9 328
5.22e-97 8 337 7 342
1.62e-94 15 337 14 340
4.87e-91 12 327 11 330

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.61e-45 20 299 3 280
Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
2.07e-44 25 299 3 275
Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
1.13e-39 24 326 7 308
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
3.89e-39 24 326 229 530
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
3.67e-33 24 326 229 529
Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.07e-44 20 299 230 507
Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
2.01e-16 22 296 4 275
4-pyridoxate dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=padh1 PE=1 SV=1
1.62e-15 25 296 2 273
Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans OX=301 GN=alkJ PE=1 SV=1
1.73e-15 20 299 42 343
GMC oxidoreductase family protein Mala s 12 OS=Malassezia sympodialis (strain ATCC 42132) OX=1230383 GN=MSY001_2108 PE=1 SV=1
1.73e-15 20 299 42 343
GMC oxidoreductase family protein Mala s 12.0101 OS=Malassezia sympodialis OX=76777 PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000680 0.999269 CS pos: 22-23. Pr: 0.9726

TMHMM  Annotations      help

There is no transmembrane helices in PITG_16169-t26_1-p1.