logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PITG_11942-t26_1-p1

You are here: Home > Sequence: PITG_11942-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora infestans
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
CAZyme ID PITG_11942-t26_1-p1
CAZy Family GH5
CAZyme Description conserved hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
271 29255.86 4.0366
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PinfestansT30-4 19344 403677 1547 17797
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PITG_11942-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 11 253 2.2e-67 0.9183673469387755

CDD Domains      help

PITG_11942-t26_1-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.90e-175 1 271 1 271
3.18e-133 1 199 1 199
2.60e-132 1 199 1 199
2.64e-92 1 201 1 178
1.39e-84 1 203 2 208

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.94e-15 101 195 69 174
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PITG_11942-t26_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000380 0.999584 CS pos: 22-23. Pr: 0.9762

TMHMM  Annotations      help

There is no transmembrane helices in PITG_11942-t26_1-p1.