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CAZyme Information: PITG_11936-t26_1-p1

You are here: Home > Sequence: PITG_11936-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora infestans
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
CAZyme ID PITG_11936-t26_1-p1
CAZy Family GH5
CAZyme Description conserved hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
333 DS028138|CGC2 34701.80 4.4128
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PinfestansT30-4 19344 403677 1547 17797
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PITG_11936-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 13 276 4.3e-79 0.9714285714285714

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
237030 kgd 1.37e-10 228 311 34 117
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.
237030 kgd 2.89e-09 245 322 40 118
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.
237030 kgd 7.98e-09 236 317 39 118
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.
236776 PRK10856 1.52e-08 226 322 155 253
cytoskeleton protein RodZ.
237030 kgd 2.58e-08 242 329 34 121
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
4.47e-189 1 333 1 333
1.47e-137 1 329 1 318
4.87e-136 1 329 1 318
2.80e-135 1 329 1 318
3.97e-135 1 329 1 318

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.81e-13 24 195 1 170
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PITG_11936-t26_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000241 0.999728 CS pos: 23-24. Pr: 0.9779

TMHMM  Annotations      help

There is no transmembrane helices in PITG_11936-t26_1-p1.